PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528430.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 299aa    MW: 33449.8 Da    PI: 5.68
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528430.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.83.4e-173887255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+e E+rRR++iN++f++L +l+P++    ++K +Ka+ L +++eYI+ Lq
  XP_010528430.1 38 RSKHSETEQRRRSKINERFQTLMDLIPQN----DQKRDKASFLLEVIEYIHFLQ 87
                    899*************************9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.7E-2334107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1935112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.5833686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-153891No hitNo description
PfamPF000108.0E-153887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-134292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKSPDLEEQE DNDVYDNLPC RNGSSSGEVT RRKTSTYRSK HSETEQRRRS KINERFQTLM  60
DLIPQNDQKR DKASFLLEVI EYIHFLQEKL QMYEGSHQMW NQGSAKLIPW RNNPRPAEDA  120
SDHSQGMKSW SSHEKAFVAP EILSDMQNSL DADVDSIAVF RTLNQDPTSE LPSYFPAHPT  180
LQFVQQDSCQ VRPSSGSAVC NTSEPSNLKE KNLASSSTAY SQGVLSSLTE ALKSSGVNLS  240
ETLISVQLSV GKRADPEAAV TASASAENTN GLADREVGSQ GETRSFYEES KHAQKRIRR
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00534DAPTransfer from AT5G38860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528430.10.0PREDICTED: transcription factor BIM3 isoform X1
SwissprotQ9FMB61e-106BIM3_ARATH; Transcription factor BIM3
TrEMBLD7MJT91e-108D7MJT9_ARALL; Uncharacterized protein
STRINGXP_010528430.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161311114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38860.11e-108BES1-interacting Myc-like protein 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]