PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527735.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 445aa    MW: 49822.7 Da    PI: 8.804
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527735.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073389411123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  XP_010527735.1 389 HECPICFRVFKSGQALGGHKRSH 411
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-6737IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.22E-7939No hitNo description
SMARTSM003550.261234IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.8841239IPR007087Zinc finger, C2H2
PfamPF139120.00291234IPR007087Zinc finger, C2H2
PROSITE patternPS0002801436IPR007087Zinc finger, C2H2
SMARTSM003550.06289111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.32589116IPR007087Zinc finger, C2H2
SuperFamilySSF576675.64E-790111No hitNo description
Gene3DG3DSA:3.30.160.608.7E-491113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-691113IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576675.64E-7384411No hitNo description
PROSITE profilePS501578.974389411IPR007087Zinc finger, C2H2
SMARTSM003550.14389411IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-10389411IPR007087Zinc finger, C2H2
PROSITE patternPS000280391411IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDQMEQSKDR NFVCKFCSKR FSCGKSLGGH IRTHTHENSV DSDEDEADKL KICDNGGQSS  60
YGLRENPKKN KRFTDQTEMI ALKKQQQILL CKECGKGFSS LKALCGHMAC HSDRDKMAMD  120
SQSDSETSST TIRRRSKRVM KRHRAFVVHR SCSASEVEQE EQEELALCLM MLSRDYSNFK  180
KVQNFVNCVG ESSDTNSVIL ETKSSSGELK HVGGFRCNAD EISAAKNQKQ LKSPQENGVL  240
LYDSDNSDSG YFRNGPRKVD SDVSIDGFLR NAGSNKAMME SGFGFSNSPA KQDKNLNRLR  300
NGTEFRKESY KEGGSSRSSA KYDLRKSKRV SSYSRKKIET NELNESVHDS GENSLEADSC  360
SDMNHNSSKA LIAAAACKKT RAKKRSKGHE CPICFRVFKS GQALGGHKRS HFMGSHHENS  420
TVVIQQEVTQ MHTMIDLNLP APFDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381387AKKRSKG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527735.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527735.10.0PREDICTED: uncharacterized protein LOC104805032 isoform X1
TrEMBLQ9FZE51e-167Q9FZE5_ARATH; C2H2-like zinc finger protein
STRINGXP_010527735.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-135C2H2-like zinc finger protein