PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010526667.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 298aa MW: 33006.1 Da PI: 4.5036 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.8e-19 | 62 | 115 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k XP_010526667.1 62 KKRRLSVDQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 115 566899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.6 | 2.6e-41 | 61 | 153 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk +yd l+ + ++L++++++L +e+++ XP_010526667.1 61 EKKRRLSVDQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKGQYDDLRLSFDSLRRDNDSLLQEIAK 153 69*************************************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.13E-19 | 55 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.006 | 57 | 117 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.9E-18 | 60 | 121 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.13E-16 | 62 | 118 | No hit | No description |
Pfam | PF00046 | 4.1E-16 | 62 | 115 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-20 | 64 | 123 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.1E-6 | 88 | 97 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.1E-6 | 97 | 113 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-16 | 117 | 158 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 298 aa Download sequence Send to blast |
MKRLRSSDSV GGLISICPST SADEQSPRGY GGEYQAMIEG YEEEATIVEE YSGNGHVGLS 60 EKKRRLSVDQ VKALEKNFEL ENKLEPERKV KLAQELGLQP RQVAVWFQNR RARWKTKQLE 120 RDYGVLKGQY DDLRLSFDSL RRDNDSLLQE IAKLKAKLNG EEDNNATESD ISVKEEEISL 180 PEMNRKTLEQ TEPSSPSPLL ENSGDLNYRS FTDLRDLLPH AAASSSAAAV AIADAGSSDS 240 SDSSAIVNEE SSSSAVVAPA AVSGGNFFQF VKTEQTXGFF SEEEPPSLHW YSAADHWT |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 109 | 117 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010526667.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010526667.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-6 | ||||
Swissprot | Q940J1 | 1e-138 | ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16 | ||||
TrEMBL | E4MW35 | 1e-140 | E4MW35_EUTHA; mRNA, clone: RTFL01-02-C17 | ||||
TrEMBL | V4MKN0 | 1e-140 | V4MKN0_EUTSA; Uncharacterized protein | ||||
STRING | XP_010526667.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G40060.1 | 1e-102 | homeobox protein 16 |
Publications ? help Back to Top | |||
---|---|---|---|
|