PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010523532.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 516aa MW: 55853.1 Da PI: 9.8774

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010523532.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_010523532.1 77 FICEVCNKGFQREQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	13.3	0.00024	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_010523532.1 153 WKCEKCSKRYAVQSDWKAHSKTC 175 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.6E-6	76	99	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.55E-7	76	99	No hit	No description
SMART	SM00355	0.0052	77	99	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	2.5E-5	77	99	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	77	99	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	118	148	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.3E-5	141	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.55E-7	148	173	No hit	No description
SMART	SM00355	130	153	173	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MAASSSSAAS FFGVRQEDQT PVPLQSSSAV SGPPHPPPPP PEEGPTQKKK RNQPRTSNSD 60 AEVIALSPKT LMATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKSN KEVKRKVYLC 120 PEPTCVHHDP SRALGDLTGI KKHYYRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTKEY 180 RCDCGTIFSR RDSFITHRAF CDALAQESAR HPTSLTSLPS HHFPYGHNIL GLSQMGPTQN 240 LDLHHHPNQN VDVLRIGSAG DGGGGPASRS SDLLPPPPPP TNASGFFMHD QNPSFHEQDT 300 TSSHHQQGFL AAANNKPLTF QHGLMQFSDS LNSPSSVNLF NLSFLSGNNN NGAATSNAAA 360 ASPAGNMMIS NPFDRENAVT GGREGPTSIG LFPNGLLSST DRISSSMQNS NPTPHMSATA 420 LLQKAAQMGS TSSTNNNSNN NVPSILRSFS GGVYGENERN LQNLMNSFSA PMDPAFGSFG 480 RNKGSSTVDK QNMTRDFLGV GQILRSMSGG GGGGHR

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MAASSSSAAS FFGVRQEDQT PVPLQSSSAV SGPPHPPPPP PEEGPTQKKK RNQPRTSNSD  60
AEVIALSPKT LMATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKSN KEVKRKVYLC  120
PEPTCVHHDP SRALGDLTGI KKHYYRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTKEY  180
RCDCGTIFSR RDSFITHRAF CDALAQESAR HPTSLTSLPS HHFPYGHNIL GLSQMGPTQN  240
LDLHHHPNQN VDVLRIGSAG DGGGGPASRS SDLLPPPPPP TNASGFFMHD QNPSFHEQDT  300
TSSHHQQGFL AAANNKPLTF QHGLMQFSDS LNSPSSVNLF NLSFLSGNNN NGAATSNAAA  360
ASPAGNMMIS NPFDRENAVT GGREGPTSIG LFPNGLLSST DRISSSMQNS NPTPHMSATA  420
LLQKAAQMGS TSSTNNNSNN NVPSILRSFS GGVYGENERN LQNLMNSFSA PMDPAFGSFG  480
RNKGSSTVDK QNMTRDFLGV GQILRSMSGG GGGGHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	149	210	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-34	149	210	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010523532.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010523532.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like, partial
Swissprot	Q9ZUL3	0.0	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	M4ECV7	0.0	M4ECV7_BRARP; Uncharacterized protein
STRING	XP_010523532.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4373	26	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	0.0	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]