PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523295.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARR-B
Protein Properties Length: 632aa    MW: 69858 Da    PI: 4.4246
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like61.31.9e-19232279654
         G2-like   6 WtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                     W+ eLH +F  a+  L G+++AtPk+il++m+v  Lt  +v+SHLQk++
  XP_010523295.1 232 WNAELHMKFTAALCAL-GEKNATPKSILKIMNVSNLTQRQVASHLQKFK 279
                     ****************.9*****************************97 PP
2Response_reg40.71.3e-14231281107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+v+ + + +  l ++le   y +v++++ ++ al +++e+   + li++ iemp++d   +l ++ e +  +p ++++++ + + a e l +G
  XP_010523295.1  23 VLLVEHDVTSLTSLSSVLELFSY-NVTSVEMARRALSMIEEEPkrFKLIITNIEMPDIDTDSFLNSLFETG--IPLMLMSSEMTTAKASEFLARG 114
                     89*********************.***************888777**********************8877..********************** PP

                     ESEEEESS--HHHH CS
    Response_reg  94 akdflsKpfdpeel 107
                     a+ +l+Kp++  ++
  XP_010523295.1 115 ASLCLEKPVSVTDI 128
                     ********998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.69E-1719141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.3E-1820155No hitNo description
SMARTSM004480.002621132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011024.76922136IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.9E-1123128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.52E-1024129No hitNo description
SuperFamilySSF466891.04E-13225283IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-18231284IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-16231280IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MAENVGKDST EVMVPSCFRG LPVLLVEHDV TSLTSLSSVL ELFSYNVTSV EMARRALSMI  60
EEEPKRFKLI ITNIEMPDID TDSFLNSLFE TGIPLMLMSS EMTTAKASEF LARGASLCLE  120
KPVSVTDIKY LWQHTIDKEE GEAKIANQPE KTVKDPTKNV ETLVKNPQTH CTEADRKGKK  180
VMSEENVKKK YLEDGQVEAF RRIVRMQRPG QSSLLGKRPI ISNVPRKRCG IWNAELHMKF  240
TAALCALGEK NATPKSILKI MNVSNLTQRQ VASHLQKFKA QVQRLSETTP RTEWKTTEKT  300
FKYPSNYEYP FKASNLTQSL IASNSSWYAL ALKNSKPELP KQSTSSSLKK CSKIPSSSPS  360
SSPPSLPPPM AVNTNVSAPC DPIPSDTSYN PCHVLETGTN QTGLVSAGAN QNPYIPEVGP  420
QQAGLVTPEE NCYVPNVDVF PSISDYVLDN DFSQMGLDPS DATFNPSAYQ ALPGDDYVLQ  480
TDVNQMDSVP WVESFLLSDD MIPGLVSCEE SYLPPDNMMP PETYINQTGL GPCEEMYVPD  540
LEDMFPSATI YHPESAMASM DSALNTTPTV QDCSVTQAEG SASPHQNFSD ITQFLNLSDI  600
DEVEGVLPVE EIQDLDEFLG LVDKFMMDND AP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523295.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019056637.10.0PREDICTED: putative two-component response regulator-like APRR6
STRINGXP_010523295.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136851424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.12e-80pseudo-response regulator 6