PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522910.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 604aa    MW: 67291.8 Da    PI: 7.1745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522910.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12446491454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+      +K++Ka+ L  Av YI++L
  XP_010522910.1 446 NHVEAERQRREKLNQRFYALRAVVPNI-----TKMDKASLLGDAVSYINEL 491
                     799***********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-5150238IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.901442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-13445495No hitNo description
PfamPF000103.0E-10446491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-17446505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-17446513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-15448497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MNIGGVVWNE DDKDIVGSLL GKRALDYLLS NSVSNENYSM LMTMESDEIL QNKLSDLVER  60
PNASNFSWNY AIFWQISRSK TGDSVLCWGD GSCREPKEGE ESEIIRILSI GREEETQQKI  120
RKRVLQKLHT FFGGSEKENY AYGLDRVTDT EMFFLASMYF SFPRGEGGPG KCFASQKSVW  180
LSDVLKSGSD YCVRSFLAKS AGIQTVVLVP TDAGVVELGL MRSLPENQES MQSIRSLFSS  240
NLTSERVVKP VVTGSPVVPE KKHENRLAGF GISSLGVQEK VVGAPKRFGK DLHNLNLLHH  300
HNHDQHRHFR EKLMIRKTDD RVPRTLEAYP NEGRLMFSNP PTNSVRSPTW ARTEIFGSRA  360
ISTTTTTATT TTNTKDLASG DDFRFVPLQP QRPAQMQIDF SGASSRACDN ADADGEGSEW  420
LDTGDEGGRP RKRGRKPANG RVEALNHVEA ERQRREKLNQ RFYALRAVVP NITKMDKASL  480
LGDAVSYINE LHAKLMAMEA ERERLGYSSN PPISREPEIN VQASGEDVTV RVNCPLDSHP  540
ASGVLNALEE SQAKVIDSKL EVAQDMLLHT FVIKSGELTK EKLIAAFSRE PPTSLQMRSS  600
SSGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-26440502264Transcription factor MYC2
5gnj_B1e-26440502264Transcription factor MYC2
5gnj_E1e-26440502264Transcription factor MYC2
5gnj_F1e-26440502264Transcription factor MYC2
5gnj_G1e-26440502264Transcription factor MYC2
5gnj_I1e-26440502264Transcription factor MYC2
5gnj_M1e-26440502264Transcription factor MYC2
5gnj_N1e-26440502264Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522910.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522910.10.0PREDICTED: transcription factor bHLH13
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A178WJW50.0A0A178WJW5_ARATH; JAM2
STRINGXP_010522910.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  2. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]