PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010520375.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 266aa MW: 29866.5 Da PI: 5.0547 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.9 | 1.6e-19 | 182 | 216 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C+tt+Tp+WR+gp+g+ktLCnaCG++++k gl XP_010520375.1 182 CRHCKTTDTPQWREGPSGPKTLCNACGMRFKKGGL 216 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.229 | 176 | 216 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.4E-17 | 176 | 226 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.19E-14 | 177 | 239 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-15 | 181 | 215 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.19E-19 | 181 | 230 | No hit | No description |
Pfam | PF00320 | 2.6E-17 | 182 | 216 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 182 | 207 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 266 aa Download sequence Send to blast |
MSDIGGFFDG LPDYTFILDE IPEVDWEYLD IPPSPIWQEL VSNEVDLPLI DDVLDGPAET 60 KIGPEFLNSG EQLQLEASEQ ASYDEKNDLK AMKTSSSLTL LEGRDSNSSD FQGLAVAGWQ 120 NTVPKRLRGK RRRQQQPQVP SSSCSSSSEP ENEFDHMIRM KKHKGKAVAY LLGSEDRTDY 180 ICRHCKTTDT PQWREGPSGP KTLCNACGMR FKKGGLCPQY RPATSPTFNP LQHSNYHRKV 240 IQLATNFWKE GGGLPMAFRS YDVEGI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010520375.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010520375.1 | 0.0 | PREDICTED: GATA transcription factor 11 | ||||
STRING | XP_010520375.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1681 | 25 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08010.2 | 7e-30 | GATA transcription factor 11 |