PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010112997.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | Trihelix | ||||||||
Protein Properties | Length: 294aa MW: 34165.1 Da PI: 6.3481 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 76.1 | 5.6e-24 | 32 | 119 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W e+++Li +r eme+++++++ + k lW++vs+km+ergf r+p qCk+kw+nl +ryk ++++ ++ ++cp+fd+l+ XP_010112997.1 32 QWGPAETKELILIRAEMERDSSSSSsttvskRSKVLWDAVSSKMAERGFARTPDQCKCKWKNLLNRYKGKETSDPEN----GRQCPFFDELH 119 7*******************9986334444399************************************99999974....678******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.178 | 25 | 95 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0056 | 29 | 97 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-5 | 30 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 7.3E-22 | 32 | 121 | No hit | No description |
CDD | cd12203 | 5.48E-19 | 32 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MMYGWGDDEE DSLGGTGIGP MMAVMSASAQ GQWGPAETKE LILIRAEMER DSSSSSSTTV 60 SKRSKVLWDA VSSKMAERGF ARTPDQCKCK WKNLLNRYKG KETSDPENGR QCPFFDELHA 120 LFTERSKNMQ RLLLESEMGS PRSRKKTKKS SAGQSSDEFS ENEEDKDNTD EEKPARSNHR 180 KRKAEKTALD KSSKAANTGS TNSGTDVQEM VKEFFQQQLR MEKQWMEIME RRAYEQQLFE 240 QQWRQSMEKL ERERLMIEQA WREREEQRRI REESRAERTD ALLTTLLNNF IHES |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010112997.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010112997.1 | 0.0 | trihelix transcription factor GT-3b | ||||
TrEMBL | W9SMK5 | 0.0 | W9SMK5_9ROSA; Trihelix transcription factor GT-3b | ||||
STRING | XP_010112997.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 3e-28 | Trihelix family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21405528 |