PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111195.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 917aa    MW: 101092 Da    PI: 6.0725
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111195.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-07413433526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+f+a+ G+C  G++C+F H+
  XP_010111195.1 413 ICDFYAK-GWCIKGSSCRFLHV 433
                     6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.896408435IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6408432IPR000571Zinc finger, CCCH-type
SMARTSM003560.0069408434IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-5413433IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MPGVQSPPAD SFPYDDDAQA EDDDEEEVEV EEEEEDGEEE EEEEGDDAAE EEEEEEEEDK  60
GNQSDSPDKA DDDDRDGPES GPILSGLQIP GLRDGVLGST TKFRGGVCFV VERHAIHKPD  120
GRGWAFGPLS YAHRNFGNLA TSRSRSPRRD GHGALVVELR WFLLVLWWCF SCGVLVSLLG  180
FWSAELCTSK LWQPCNIEAL FSSSRWSWRW VMLCVDKRSA LVVELRWFLL VLWWCFSCGV  240
LVSCGTVLST LFGRVGWLVA SGFVHARENV KSQRDGGFGS GSSTRGDFGL DVALAETNRS  300
VEVVVDKKDA GTVSEKNSST NYTNPNSNSN ADLSKTSILS SADGKEMVAA MQMNSFFGRK  360
DVPHSHGETK QMDMQSGDDR TEIASRLASS GIETRSLTPG TEIKDQNKRP AIICDFYAKG  420
WCIKGSSCRF LHVKDHQNKE LPRREGEVAA DCKREVQLEG LKETTQTARS PGDPLAASVG  480
NKSLFSSQRI QPWDHIESKT SHHLPKLPKL PLLQRDESFP FSFKDIGIDR KGQNRSANDY  540
GNRGSVFRDR LCPEYTVSSS HHFMNPSSHS RIVGDLASVQ CQPPYNSLPS SLSSHPRNSS  600
ASNSLLATGT LASNQVSSWT GSLLPFSYSS LNASHLGSSS SSLLQGSSHF SGDKLKSTKR  660
KISSNDWEPS VPFRPSFLLR SLISPPGSKY DPLRDSIELP KLGETSLRAS LHSQGSSILN  720
SSHQQDSGDV VSEPRGLACK DETMSVSSHN TNHGKDMQTA EVEVVGTSSD RKHRNLLKQE  780
NSLGSSAAKD ITAAKSDGRH QRLGPRDSVD VKIDSFRQKN KMEAGHIMEG GVDKESKALR  840
QFRAALIDSV KESLKPKWRE GLLSKDAHNK IVKKAVEKVL STLQPDQMPT SMELVMQFLA  900
SSRPKIDKLI EVSEYTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111195.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031052.10.0protein FRIGIDA-ESSENTIAL 1
TrEMBLW9SFA90.0W9SFA9_9ROSA; Zinc finger CCCH domain-containing protein 27
STRINGXP_010111195.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-32C3H family protein