PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010111067.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 419aa MW: 46032.9 Da PI: 8.465 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.5e-11 | 49 | 75 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_010111067.1 49 PGEPDCSYYIRTGLCRFGATCRFNHPP 75 5789*********************97 PP | |||||||
2 | zf-CCCH | 30.7 | 5.3e-10 | 80 | 99 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ XP_010111067.1 80 YYLKTGTCKFGATCKFHHPR 99 8*****************96 PP | |||||||
3 | zf-CCCH | 35.2 | 2.1e-11 | 123 | 145 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ XP_010111067.1 123 ECAYYLRTGQCKFGSTCKFHHPQ 145 6********************97 PP | |||||||
4 | zf-CCCH | 37.9 | 3e-12 | 280 | 305 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ XP_010111067.1 280 GQPECQFYMKTGDCKFGAVCKFHHPR 305 5799********************96 PP | |||||||
5 | zf-CCCH | 40.2 | 5.5e-13 | 325 | 351 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_010111067.1 325 PGEPLCIFYSRYGICKFGPSCKFDHPM 351 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.587 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-5 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-8 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-5 | 53 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-4 | 54 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.032 | 76 | 99 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-8 | 80 | 99 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-4 | 80 | 99 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.493 | 80 | 100 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.197 | 118 | 146 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-5 | 118 | 145 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 119 | 146 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-9 | 123 | 145 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 124 | 144 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-6 | 278 | 305 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.183 | 278 | 306 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-9 | 280 | 305 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.37E-6 | 282 | 308 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-5 | 284 | 306 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 324 | 352 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 324 | 351 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-10 | 326 | 351 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 327 | 351 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-4 | 329 | 349 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 419 aa Download sequence Send to blast |
MEFDAGIPMS LAAVTELREL SPSFSQDAIW QMNLRSSETM ESGTYPERPG EPDCSYYIRT 60 GLCRFGATCR FNHPPNRKLY YLKTGTCKFG ATCKFHHPRD KAGIAGRVSL NILGYPLRPN 120 EMECAYYLRT GQCKFGSTCK FHHPQPTNMM VSMRGSPVYP TVQSPTTPGQ QSYIGGITNW 180 SRASFIPSPR WQGSSSYAPM ILPQGVVSVP GWNTYSGQLG SVSSPERQQP SGSSQIYGTS 240 RQSDPANTGS QGTLSPYRSG SIPVGFYALQ RENVFPERTG QPECQFYMKT GDCKFGAVCK 300 FHHPRERLIP APDCLLSPMG LPLRPGEPLC IFYSRYGICK FGPSCKFDHP MGIFTINLSA 360 TSSTDTPVRR LLGSSSGTTA LNLSSEGLVE AGSTNPRRLS LSETRQMPSG DDNNTDTED |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010111067.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024030975.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | W9SVH0 | 0.0 | W9SVH0_9ROSA; Zinc finger CCCH domain-containing protein ZFN-like protein | ||||
STRING | XP_010111067.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-170 | zinc finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21398233 |