PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010110423.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

G2-like

Protein Properties

Length: 273aa MW: 31120 Da PI: 8.8601

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010110423.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.4	6.5e-33	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl XP_010110423.1 18 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 72 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.455	15	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-32	15	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-24	18	73	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.76E-16	18	74	IPR009057	Homeodomain-like
Pfam	PF00249	8.0E-9	20	71	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-24	120	165	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MERNFEYENG IVMTRDPKPR LRWTADLHDR FVDAVTKLGG PDKATPKSVL RLMGLKGLTL 60 YHLKSHLQKY RLGQQVRRQN SAEHSKESSG CSYAQFVNHS SGTTSTTSSR GDNKEHSEIP 120 IAEALRLQID VQKRLQEQLE VQKKLQMRIE AQGKYLQAIL EKAQNSLTLD MNGPGNLEVA 180 KAQLTDFNSA LSNFMENMNE VDQKSGIIEM NGVYRKESDT SFNIYQEGNR EKTDEDTKLK 240 ETIHFDLNTK GGFDFVSARG LDLEPKMLSY RRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010110423.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010110423.2	0.0	myb family transcription factor PHL11
Swissprot	C0SVS4	1e-85	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	W9S599	0.0	W9S599_9ROSA; Myb family transcription factor APL
STRING	XP_010110423.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-70	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	21405630

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]