PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010109898.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family LBD
Protein Properties Length: 319aa    MW: 35307.7 Da    PI: 7.1183
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010109898.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.81.8e-4391081100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk++rrkC+++Cv+apyfp +qp+kf nvhk+FGasnv+kll++l+ ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l+
  XP_010109898.1   9 PCAACKIQRRKCTQECVFAPYFPPDQPQKFCNVHKVFGASNVSKLLQELSASQREDAVNSLAYEAEARLRDPVYGCVGLISVLQHKLRQVQNDLN 103
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                      +k+e
  XP_010109898.1 104 NAKKE 108
                     99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.9938109IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-439106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MASSSSSSPC AACKIQRRKC TQECVFAPYF PPDQPQKFCN VHKVFGASNV SKLLQELSAS  60
QREDAVNSLA YEAEARLRDP VYGCVGLISV LQHKLRQVQN DLNNAKKELA SYIGPHAAAS  120
LNLSLFQPPP PPPLPPYNNL HQHHQPPFFP QPLMAIPKGA SSSSSLPPAG HEIVLNIDPH  180
QQQQQQHFFE AQQLAAAMAA REQQELLRIS LEQKLNQPQE FLASSSHGFN NQNMSGPSSN  240
TISPTLALGS SFDNSNYHVN QPQQSEHHNL HHHQLLREQL MLGQAPQPEV AQQVLHQQQT  300
QIMLQKLESE ESKSVGPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4731125114LOB family transfactor Ramosa2.1
5ly0_B3e-4731125114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010109898.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109898.20.0LOB domain-containing protein 36, partial
TrEMBLW9SE870.0W9SE87_9ROSA; Uncharacterized protein
STRINGXP_010109898.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23533484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.18e-63ASYMMETRIC LEAVES 2-like 1