PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107420.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 312aa    MW: 34773 Da    PI: 5.0239
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107420.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.19.1e-36221122101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++++k+ll++
  XP_010107420.1  22 FLTKTYQLVDDQAIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNEYFRRSEKRLLCE 107
                     9*****************************************************************99.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_010107420.1 108 IQRRK 112
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-3713106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-5418111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.88E-3419111IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-202245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.9E-3222111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-206072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MATEPAGDSA SGESQRSLPT PFLTKTYQLV DDQAIDDVIS WNDDGSTFIV WNPTVFARDL  60
LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW EFSNEYFRRS EKRLLCEIQR RKIATPGATP  120
SAAATTTTVA VTVAAIPTAM PIISPSNSGE EQVISSNSSP TRGPAELVDE NERLRKENLQ  180
LSKELAEMKS ICSNIFSMVS NYACLQSESV FQARESGFRE VEPLDLMPAK RFSGEGEDAT  240
AEEKTSPKLF GVTIGAKRAR EGGNDIEPAE DQTDLLLRQP AGVDVKSEPL DVVHQEKPWL  300
KQPHRLNQRV CN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-23511115129Heat shock factor protein 1
5d5v_B5e-23511115129Heat shock factor protein 1
5d5v_D5e-23511115129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107420.10.0heat stress transcription factor B-2a
SwissprotQ9SCW45e-96HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLW9RWR00.0W9RWR0_9ROSA; Heat stress transcription factor B-2a
STRINGXP_010107420.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-95heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]