PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010104669.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | C2H2 | ||||||||
Protein Properties | Length: 380aa MW: 41827.6 Da PI: 8.0029 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00022 | 143 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F + +L++H+ + H XP_010104669.1 143 FPCTACGEIFQKPQTLEQHQAVkH 166 89******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.034 | 143 | 171 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 145 | 166 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 3.84E-14 | 168 | 379 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.5E-5 | 179 | 285 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene3D | G3DSA:3.90.228.10 | 5.1E-4 | 315 | 379 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MAPSEASSLF NKVISFFLIL LLHFGCFAFT STDAAEDGGG REGHGNNNRS SKKRKLSPVI 60 SSSWSFLKGI FASKSCKTSI QTHPSTPPRS SQLSIASLVI LPENTADQHL SDVVPRKTSR 120 PESDISSSAE KESLFFPLRN DIFPCTACGE IFQKPQTLEQ HQAVKHAVSE LIDGDSGKNI 180 VRIIFKTGWT DTHKSPIIHR ILKIHNSSKI LSRFEEYRET VKAKAARNGA VRRRDERCIA 240 DGNELLRFHC CTFLCDLGLN GNSAICNHQY CSVCGIIKSG FSPKLDGIST LSSSWRAHVA 300 IPEEIEEEFG FMNVKRAMLV CRVVAGRVGS EAFEADKEDG GFDSVLGRGG SGVHTRMDEE 360 ELLAFNPRAV LPCFVIVYTV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010104669.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104669.1 | 0.0 | uncharacterized protein LOC21404881 | ||||
TrEMBL | W9RPJ2 | 0.0 | W9RPJ2_9ROSA; Uncharacterized protein | ||||
STRING | XP_010104669.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10668 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-118 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21404881 |