PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104482.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 365aa    MW: 42417.4 Da    PI: 8.8463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104482.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.81.1e-076283223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C++Cg sF+ + +Lk+H+r+H
  XP_010104482.1 62 TCEKCGASFKKPAYLKQHMRSH 83
                    6********************9 PP
2zf-C2H217.51.1e-0589113123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+Cp  dC+ ++ rk++L+rH+ +H
  XP_010104482.1  89 YVCPvdDCPCCYIRKDHLTRHLLRH 113
                     9**********************99 PP
3zf-C2H220.61.2e-06156180123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+Cp   Cgk+F+  s L++H  +H
  XP_010104482.1 156 YVCPevGCGKVFKFASKLRKHEDSH 180
                     9********************9888 PP
4zf-C2H218.26.6e-06247271223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC+   C+ +Fs+ksnL++H +  H
  XP_010104482.1 247 KCNfkGCDHTFSTKSNLNQHVKAaH 271
                     79999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355301739IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.0696188IPR007087Zinc finger, C2H2
SMARTSM003550.00286183IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-76282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SuperFamilySSF576676.69E-1169122No hitNo description
Gene3DG3DSA:3.30.160.606.4E-1183115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.53889118IPR007087Zinc finger, C2H2
SMARTSM003550.06789113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091113IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66118148IPR007087Zinc finger, C2H2
SMARTSM003550.26118143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120143IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.8E-8153180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.44E-5153182No hitNo description
SMARTSM003550.0026156180IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.928156185IPR007087Zinc finger, C2H2
PROSITE patternPS000280158180IPR007087Zinc finger, C2H2
SMARTSM003550.83188213IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280190213IPR007087Zinc finger, C2H2
SMARTSM003556.5216237IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.31E-9227284No hitNo description
PROSITE profilePS5015712.196246276IPR007087Zinc finger, C2H2
SMARTSM003557.3E-4246271IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-6247272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280248271IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-4273300IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.3277303IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280279303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEEAGEKMPI FRDIRRYFCD HCGICRSKKS LIASHVLTHH KDEMEKRAET GETKEGVKQT  60
NTCEKCGASF KKPAYLKQHM RSHSDERQYV CPVDDCPCCY IRKDHLTRHL LRHKGKLFKC  120
PIQNCKSEFA FQGNVKRHVV EQHDEDHPSD ECEKQYVCPE VGCGKVFKFA SKLRKHEDSH  180
VKLNTVETIC AEPGCIKTFT NVQCLKAHIQ SCHRHFTCEI CGTKQLKKNI KRHLRTHEEK  240
VSPESIKCNF KGCDHTFSTK SNLNQHVKAA HLKQKPFACG FAGCGMRFAY KHVRDNHEKT  300
GRHVYTHGDF EESDEQFRSR PRGGRKRKYP NVEMLVRKRV TPPNQSDAIS EYFSMFLSEE  360
QQSEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A8e-116620820155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D8e-116620820155PROTEIN (TRANSCRIPTION FACTOR IIIA)
2i13_A7e-118626919183Aart
2i13_B7e-118626919183Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319327RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010104482.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104482.10.0transcription factor IIIA
SwissprotQ84MZ41e-137TF3A_ARATH; Transcription factor IIIA
TrEMBLW9RZD50.0W9RZD5_9ROSA; Transcription factor IIIA
STRINGXP_010104482.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-140transcription factor IIIA