PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104283.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 367aa    MW: 42270.8 Da    PI: 8.8391
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104283.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-182065147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
   XP_010104283.1 20 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 65
                     899*****************************.***********996 PP
2Myb_DNA-binding59.57.4e-1972115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
   XP_010104283.1  72 RRPFTEEEEEKLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 115
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.531566IPR017930Myb domain
SuperFamilySSF466898.99E-3018113IPR009057Homeodomain-like
SMARTSM007178.4E-151968IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-272173IPR009057Homeodomain-like
PfamPF139213.3E-172383No hitNo description
CDDcd001671.64E-132364No hitNo description
PROSITE profilePS5129428.24467121IPR017930Myb domain
SMARTSM007179.6E-1771119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2174120IPR009057Homeodomain-like
CDDcd001679.26E-882114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEDSAGPTNS SADDAKSCPR GHWRPAEDEK LRQLVEQYGA QNWNSIAEKL QGRSGKSCRL  60
RWFNQLDPRI NRRPFTEEEE EKLLAAHRIH GNKWALIARL FPGRTDNAVK NHWHVIMARK  120
QREESKLCGK RSSCQLQDHV YCNDSEGNFP ARKITSFGIY DNNIDHYHNH GHQYFKQVMI  180
DKDRMLLSES PSSTTSSPPS NWNFASTTTM ATTNASAKPV LEGRFFMRRD QDYGEREFFK  240
CGNPISDHNY YRSLYPSNSS SWFGGNNYNK RVHVSRPFDH LQYHQYNHYG ILGKNCKMQR  300
DHQTLLLANR NNSFCDKVTP RATYGKLRAS SSTILQGQEG DDDHQSNLEA KEVHFIDFLG  360
VGISSNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31201207107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010104283.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104283.10.0transcription factor MYB54
TrEMBLW9RYV90.0W9RYV9_9ROSA; Transcription factor
STRINGXP_010104283.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.15e-66myb domain protein 52