PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010104264.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | Trihelix | ||||||||
Protein Properties | Length: 292aa MW: 34642 Da PI: 8.4924 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 85.3 | 7.6e-27 | 41 | 123 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++L+ +r e+++++ ++k++k lWe +++km+e+gf+rsp+qCk+kw+nl +ryk ++++e + ++++++p++++l+ XP_010104264.1 41 QWSMQETKELLMIRAELDQTFMETKRNKLLWEVIANKMKEKGFNRSPEQCKCKWKNLVTRYKGCETMEAE---TVRQQFPFYNELQ 123 7********************************************************************8...47788******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.6E-4 | 38 | 100 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.47E-23 | 40 | 105 | No hit | No description |
Pfam | PF13837 | 8.0E-22 | 41 | 125 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-4 | 41 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.014 | 42 | 98 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MEGHHHHHHH HQYQQQQQQQ QAIHHQQNIS VSVDVSDRFP QWSMQETKEL LMIRAELDQT 60 FMETKRNKLL WEVIANKMKE KGFNRSPEQC KCKWKNLVTR YKGCETMEAE TVRQQFPFYN 120 ELQAIFTARM QRMLWAEAEG TGSKKKAVAL SSDDDDDEHN DGSEGEQKGN IGSTMRKKMK 180 KVKAIGSSSG TTSGGGISSN NLKEILDDFM KQQMQMEAQW REAFEAREKE RRLKEMEWRQ 240 TMEALESERL MMERRWRERE EQRRMREEAR AEKRDALITA LLNKLRRDDH AS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 3e-14 | 42 | 121 | 7 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010104264.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104264.2 | 0.0 | trihelix transcription factor GT-3b | ||||
Swissprot | O80450 | 9e-79 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | W9RYU5 | 0.0 | W9RYU5_9ROSA; Trihelix transcription factor GT-3b | ||||
STRING | XP_010104264.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 1e-60 | Trihelix family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21399455 |
Publications ? help Back to Top | |||
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