PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010102326.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | Trihelix | ||||||||
Protein Properties | Length: 452aa MW: 51587.7 Da PI: 5.9705 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 68.9 | 1e-21 | 122 | 218 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt++ v++Li+++ ++++ + +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d XP_010102326.1 122 KWTDNVVKLLIAVVACVGDDGMVAGgeglkrksgilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPALMD 216 7**************888888864334666677888**********************************************6699999998888 PP trihelix 84 ql 85 ++ XP_010102326.1 217 SM 218 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.7E-18 | 120 | 245 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MDSSGLGGGF LSGPNGGILD LESPMHRHQT RQLGHSSLAH QHHMSVMGGV EDEPHPISLM 60 EVKGSASKGV SMFGKGKGVA PINGNHGYNL SEEDEPSYME DGSGENFDGV KGKKGSPWQR 120 MKWTDNVVKL LIAVVACVGD DGMVAGGEGL KRKSGILQKK GKWKTVSKIM ISKGCHVSPQ 180 QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDSMPH LSAKAKDDVR KILSSKHLFY 240 KEMCAYHNGQ RILDCHDIDL QGYSLPLERC SKDNNGSDEE EAEENHDSED DDLDNEDDNN 300 DDNDGERMTE FGDRKKVNEE DFHFWTSPQD SFEGEMARFF QDPTKSLWER REWVKKQMMQ 360 LEVQRVNVQA EALELEKQRF RWLRYCSKKD RELERLRLEN ERMKLENERK VLQLRQKELE 420 LDLRRSEASL EHSSLGIDRL QGRDQIDLGR HQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010102326.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010102326.1 | 0.0 | uncharacterized protein LOC21398378 isoform X1 | ||||
TrEMBL | W9S6Z6 | 0.0 | W9S6Z6_9ROSA; Uncharacterized protein | ||||
STRING | XP_010102326.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10546 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 8e-70 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Entrez Gene | 21398378 |