PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010098815.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | C2H2 | ||||||||
Protein Properties | Length: 303aa MW: 33023.7 Da PI: 8.3157 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00081 | 120 | 142 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_010098815.1 120 YQCKTCDRCFPSFQALGGHRASH 142 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 208 | 230 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_010098815.1 208 HECSICGAEFTSGQALGGHMRRH 230 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.19E-9 | 119 | 142 | No hit | No description |
Pfam | PF13912 | 1.3E-10 | 119 | 144 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.993 | 120 | 147 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.077 | 120 | 142 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 122 | 142 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.19E-9 | 203 | 230 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 206 | 230 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 6.7E-13 | 207 | 232 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.723 | 208 | 230 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 208 | 230 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 210 | 230 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEAQEDYNQL MIKQMTIKGK RTKRHRAQPH GPVSSLVLSI APSSSSSSGG AGGLALLDGV 60 STSSSDDQSA EIISRTEEED MANCLILLAQ GRDRHDHHGD RDGPRNSEPA AVRHANDVVY 120 QCKTCDRCFP SFQALGGHRA SHKKPKGNNS AAEEKKTSFF LVEDHEQFVS SATSTTLSLQ 180 MSSRGILRNG NNRISVSNTN NSNKAKVHEC SICGAEFTSG QALGGHMRRH RATSFMTAPT 240 TLSVGTTSSS DHQSRESKKP RNVLQLDLNL PALDDDRRET KFPFSSKEQV IVFAASPLVD 300 CHY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010098815.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010098815.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | W9R8C9 | 0.0 | W9R8C9_9ROSA; Zinc finger protein ZAT5 | ||||
STRING | XP_010098815.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 3e-52 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21405392 |