PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010098805.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 29232.2 Da PI: 4.7511 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEde+l+ v++lG ++W++ a+ g++R++k+c++rw++yl XP_010098805.1 18 KGTWLEEEDERLISFVQLLGERRWDSLAKASGLKRSGKSCRLRWLNYL 65 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50 | 6.9e-16 | 75 | 116 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + eE+ +++++++++G++ W++Iar+++ gRt++++k++w+++l XP_010098805.1 75 SIEEENIILELHERWGNK-WSKIARRFP-GRTDNEIKNYWRTHL 116 569***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.236 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.75E-27 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-15 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-20 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.31E-9 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 25.933 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-13 | 70 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-24 | 73 | 120 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-14 | 75 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.51E-10 | 77 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAYQEIAMQR EEGEELRKGT WLEEEDERLI SFVQLLGERR WDSLAKASGL KRSGKSCRLR 60 WLNYLRPNLK HGQISIEEEN IILELHERWG NKWSKIARRF PGRTDNEIKN YWRTHLRKKL 120 AQGQEGKSQY ELEKAKGDFL FETKNESSVP KSTCESSTHG DHGSVEDLWG SCSWDNSSEA 180 SGMSSADFAL TSSPYENRLS DWISEYSNDI QSEMNYQNDS ISIESASSYL ECWTAPDYSY 240 TWDCSGSLWD MT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-27 | 15 | 120 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-26 | 9 | 120 | 49 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-26 | 9 | 120 | 49 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 7e-27 | 9 | 120 | 18 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010098805.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024935270.1 | 2e-90 | transcription factor MYB27-like isoform X2 | ||||
Swissprot | Q9SCP1 | 4e-67 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | W9R8B8 | 0.0 | W9R8B8_9ROSA; Myb-related protein MYBAS1 | ||||
STRING | XP_010098805.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 5e-62 | myb domain protein 27 |
Link Out ? help Back to Top | |
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Entrez Gene | 21405382 |
Publications ? help Back to Top | |||
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