PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010096556.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 361aa    MW: 39018.7 Da    PI: 7.4513
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010096556.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-0890114126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f++ GtC+y  +C+FaH+
  XP_010096556.1  90 FKTKLCCKFRA-GTCPYITNCNFAHS 114
                     69*********.*************8 PP
2zf-CCCH18.63.4e-06164189126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yGd+C+F H+
  XP_010096556.1 164 YKGRHCKKFYTEEGCPYGDNCTFLHD 189
                     78888********************7 PP
3zf-CCCH42.21.3e-13240265126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_010096556.1 240 WKTRICNKWELTGYCPFGSKCHFAHG 265
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.58E-887120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-1487122IPR000571Zinc finger, CCCH-type
SMARTSM003560.003589115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8489116IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-590114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-9161191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-7162191IPR000571Zinc finger, CCCH-type
SMARTSM003560.058163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23163191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-17235269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-9237270IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-9239266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422239267IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-11240265IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDYGRENVVQ VITGSGSENW SSDQAVWATE DDYRAWNNSE FSGDTFTNSN FDQRQSQSRS  60
GSEPPNKKSK NSQDVTSSNN RSKAIGKMFF KTKLCCKFRA GTCPYITNCN FAHSIEELRR  120
PPANWQEIVA AHEEERAVSS EPREEFQIPS VGSSSFVVET QRSYKGRHCK KFYTEEGCPY  180
GDNCTFLHDE QSKNRESVAI SLGPGGYGGG GGGGGGGGGG GGGGGGTPSG ANSNSKPSNW  240
KTRICNKWEL TGYCPFGSKC HFAHGAAELH RYGGGLVETE ARDSSSVPAE SKPPGGVPPK  300
TPADTVVASV PSVPHSDVYH IGVPSQRSSI VIQRPGQRAN QKWKGPDKIS RIYGDWIDDI  360
E
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010096556.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096556.10.0zinc finger CCCH domain-containing protein 12 isoform X1
RefseqXP_024021503.10.0zinc finger CCCH domain-containing protein 12 isoform X1
SwissprotQ84UQ31e-127C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLW9R2140.0W9R214_9ROSA; Zinc finger CCCH domain-containing protein 56
STRINGXP_010096556.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-127C3H family protein