PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010095991.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | Trihelix | ||||||||
Protein Properties | Length: 368aa MW: 40062.5 Da PI: 10.1383 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 47.8 | 3.9e-15 | 56 | 138 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v++++ ++ ++++qCk+k+e+++kry+ + + + + ++p++++l+ XP_010095991.1 56 EWSEGAVSSLLEAYEGKWVLRNRAKLKGHDWEDVARYVssraNCTKSPKTQTQCKNKIESMKKRYRSESTADAS-------SWPLYSRLD 138 5*************************************854444555566679*************99988876.......489888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.6E-18 | 54 | 138 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MDKETNQQEN PSLLPNNATI VGAAATVIIV PKEESPRKPF GGGGGGTGGD RLKRDEWSEG 60 AVSSLLEAYE GKWVLRNRAK LKGHDWEDVA RYVSSRANCT KSPKTQTQCK NKIESMKKRY 120 RSESTADASS WPLYSRLDLL LRGGNGPSAA AAAAAAQTLQ SPAPPTPLSL PPSNNSALVL 180 LEPISTAPPP PPPPPPPACP HPPPPPPLGT AQNSHGSNGV DRLAKEDHEA VNKILSDHAS 240 DKNNSMETTS DSSTPALYSK KAEKMRLRSK TTNKMMRMEK KKRKRKELEL DIAESIRWLA 300 EAVVKSEQAR MEGMREIERM RVEAEAKRAE MDLKRTEIIA NTQLEIARLF AASGVGKAVD 360 SSLRIGRN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 285 | KKKRKRK |
2 | 280 | 285 | KKRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010095991.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010095991.1 | 0.0 | trihelix transcription factor ASIL2 isoform X2 | ||||
TrEMBL | W9R0Q5 | 0.0 | W9R0Q5_9ROSA; Uncharacterized protein | ||||
STRING | XP_010095991.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4994 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 1e-52 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Entrez Gene | 21406732 |