PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010095211.1 | ||||||||
Common Name | DREB5E | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 20454.1 Da PI: 5.0179 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.6 | 3e-18 | 21 | 70 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ykGVr + +g+Wv+eIr+p+ + r++lg+++ +e+Aa+a++aa +++ge XP_010095211.1 21 YKGVRMRT-WGKWVSEIRVPK----SgERIWLGSYDAPEKAARAYDAAQYCIRGE 70 9****998.**********94....35*************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.5E-30 | 20 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.995 | 20 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 21 | 32 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-27 | 21 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.99E-28 | 21 | 79 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-20 | 21 | 78 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-10 | 21 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 188 aa Download sequence Send to blast |
MDLATTSIPK KVRRGRTFGP YKGVRMRTWG KWVSEIRVPK SGERIWLGSY DAPEKAARAY 60 DAAQYCIRGE RGSFNFPADK RPVLPQGSMV SLSKKDIQEI ATNFASFESN ISTSCSSLVS 120 SAMPQVPPDN NSAPPNMLVC SGMDGGAYES IGNSFASTSV IGATASSPES LELDDFLLLD 180 TEWIDELI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-17 | 15 | 79 | 9 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00463 | DAP | Transfer from AT4G31060 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010095211.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF678381 | 0.0 | KF678381.1 Morus notabilis dehydration responsive element binding transcription factor (DREB5E) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010095211.1 | 1e-137 | ethylene-responsive transcription factor ERF015 | ||||
Swissprot | Q6NLD5 | 2e-54 | ERF15_ARATH; Ethylene-responsive transcription factor ERF015 | ||||
TrEMBL | W6FFV4 | 1e-136 | W6FFV4_9ROSA; Dehydration responsive element binding transcription factor | ||||
STRING | XP_010095211.1 | 1e-136 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15479 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31060.1 | 5e-49 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21387444 |
Publications ? help Back to Top | |||
---|---|---|---|
|