PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010093963.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 173aa MW: 19927.4 Da PI: 8.4515 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.8 | 2.7e-16 | 19 | 70 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t+ q++ Le+ F +++++ae++ +LA++lg++ rq +W+qNrRa++k XP_010093963.1 19 RRLTQAQVRLLETSFTTDHKLQAERKFQLATSLGMSPRQLAIWYQNRRARQK 70 379************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 96.1 | 3.5e-31 | 17 | 108 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 + rrl++ qv+lLE+sF++++kL+ erK +la++Lg++prq+a+W+qnrRAR kt+ +E dy++++ +++ + +e++rLekev L++el++ XP_010093963.1 17 RSRRLTQAQVRLLETSFTTDHKLQAERKFQLATSLGMSPRQLAIWYQNRRARQKTQTIEFDYRTIQLRLEDVLAEKRRLEKEVVMLKHELNK 108 789************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.05E-15 | 11 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.418 | 12 | 72 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.0E-13 | 15 | 76 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.29E-11 | 16 | 72 | No hit | No description |
Pfam | PF00046 | 1.5E-13 | 19 | 70 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-15 | 21 | 70 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.3E-5 | 43 | 52 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 47 | 70 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.3E-5 | 52 | 68 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MDFHYIQTQD SSKLQQRSRR LTQAQVRLLE TSFTTDHKLQ AERKFQLATS LGMSPRQLAI 60 WYQNRRARQK TQTIEFDYRT IQLRLEDVLA EKRRLEKEVV MLKHELNKAQ QMQLLASSGA 120 VNSAANSDLP SVAVSAVDDH ASSSSLHNYS YGEENNVAQL QVEELYTCLS PWP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010093963.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010093963.1 | 1e-126 | homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | W9R304 | 1e-124 | W9R304_9ROSA; Homeobox-leucine zipper protein ATHB-21 | ||||
STRING | XP_010093963.1 | 1e-125 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 2e-26 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Entrez Gene | 21393819 |