PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010093815.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | C2H2 | ||||||||
Protein Properties | Length: 410aa MW: 45652.2 Da PI: 10.2757 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00036 | 99 | 120 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C+k+F + +L H+r+H XP_010093815.1 99 YCCVCNKTFFSLRSLSGHMRSH 120 5********************9 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00059 | 317 | 339 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C ksFs+ L H + H XP_010093815.1 317 YKCSSCEKSFSTFQALGGHRSIH 339 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 0.0011 | 19 | 42 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.3 | 19 | 41 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.536 | 19 | 46 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 21 | 41 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.34E-10 | 96 | 120 | No hit | No description |
SMART | SM00355 | 0.093 | 98 | 120 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.141 | 98 | 120 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.6E-4 | 100 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 100 | 120 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.34E-10 | 312 | 339 | No hit | No description |
Pfam | PF13912 | 9.5E-8 | 317 | 339 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.074 | 317 | 344 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 317 | 339 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.5E-5 | 317 | 341 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 319 | 339 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MDKFFIEGSN SSKPRGRTRT CPACGKVFSS GRAFGGHWRY HLQQDSRRGE KHSFFQRTGD 60 KFKAKARGGK RSFTAATTMN TTAMRNDDED QDRYDKTIYC CVCNKTFFSL RSLSGHMRSH 120 PERVWRGIQP PAAPPPNRMS SSSSEDARNQ DHWSEIEISP VDLLEHFPWS WSKTGKRGRK 180 SSAVAAAVDG LIDLSRGRES SRKFEKSIAD PSPLTSEDRI AKQLKIKSVS GKGTLLRISH 240 TYDHQEKEDT KDMKGKKVII IDSDVREKKG KNMCLGEKKR NFKSSSSTET DENVSLLGST 300 ASKTTKKIDN VTTTNWYKCS SCEKSFSTFQ ALGGHRSIHT KKIISTTPKM AEKEISTTNA 360 SDLITGSTTQ LADHSSPEIT MSSSGFGIRG GQSGRTLLDF DLNELPFGMA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010093815.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024019722.1 | 0.0 | uncharacterized protein LOC21405341 | ||||
TrEMBL | W9RGX4 | 0.0 | W9RGX4_9ROSA; Zinc finger protein ZAT2 | ||||
STRING | XP_010093815.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 2e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21405341 |