PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093406.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 244aa    MW: 27303.6 Da    PI: 8.0368
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093406.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-17350148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed++l+d+++++G g+W++ ++  g+ R++k+c++rw +yl
   XP_010093406.1  3 KGAWSKQEDQKLIDYIHKHGEGCWRSLPKAAGLFRCGKSCRLRWINYL 50
                     79********************************************97 PP
2Myb_DNA-binding521.7e-1656101148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_010093406.1  56 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 101
                      8999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.295150IPR017930Myb domain
SMARTSM007173.5E-14252IPR001005SANT/Myb domain
SuperFamilySSF466892.49E-28297IPR009057Homeodomain-like
PfamPF002495.8E-16350IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-22457IPR009057Homeodomain-like
CDDcd001677.39E-12550No hitNo description
PROSITE profilePS5129427.00451105IPR017930Myb domain
SMARTSM007171.1E-1555103IPR001005SANT/Myb domain
PfamPF002493.9E-1556101IPR001005SANT/Myb domain
CDDcd001671.24E-1158101No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2658106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MNKGAWSKQE DQKLIDYIHK HGEGCWRSLP KAAGLFRCGK SCRLRWINYL RPDLKRGNFA  60
EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEIKNYWNSH LRRKLINMGI DPNNHRLNQS  120
FSRPNHDLQN SQTVGSAIVS SPTIKISPSK PHGGNGDHEV SDGGSCLEDD ENSSSLLPDL  180
NLDLTMSSPN YSPEIGNKTI KLGEQKSYII NINDHHEIKP KSGKDLEVLG SAPTLQISSH  240
DGQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-29110525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093406.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093406.21e-179transcription factor MYB8
SwissprotQ9S9K92e-73MYB3_ARATH; Transcription factor MYB3
TrEMBLW9R1G81e-178W9R1G8_9ROSA; Transcription factor
STRINGXP_010093406.11e-179(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-73myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]