PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093356.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 511aa    MW: 55055.6 Da    PI: 9.1372
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093356.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05628123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C+k F r  nL+ H r H
  XP_010093356.1  6 FICEVCNKGFQREQNLQLHRRGH 28
                    89*******************88 PP
2zf-C2H213.40.0002482104123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_010093356.1  82 WKCEKCSKRYAVQSDWKAHSKTC 104
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-7528No hitNo description
Gene3DG3DSA:3.30.160.605.6E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.99628IPR007087Zinc finger, C2H2
PfamPF121712.4E-5628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0052628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551304777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-777102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTNK EPKRKVYLCP EPTCVHHDPS  60
RALGDLTGIK KHYSRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAQESARH PSNLSTIGGN LYGGSNTPSL GLSQLGPQII SSLQDHQNNQ  180
SGDVLRLGTP LHHHHRPPPA GQFDHHILSP NFRPQQPSAM PSSAAAFFLP GDQSNQQYHH  240
DQDHHQQQSH QHGFLPNKPF HGLMQFSELQ SNASNVNNNS PSGLLISNHF SAENGTSAGG  300
GGGGAGEGPN IFSGHIVSSD QMSAGAVPSL YSGAMQSNHA SAVGHMSATA LLQKAAQMGS  360
TSSNNSTASL LRTFGTSSPA STGPNKASFV GSGLFGADQN DQSHLQDLMN SFTAAGNSSI  420
FGTPFGGGTE EPKLQQNSNL PMNSSLGGSD RFTRDFLGVG QIVRSVSGGF ASKRSSEQQQ  480
QQQHQQMSSL DSESNAAPSS QSFGGSGGNF Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3478142367Zinc finger protein JACKDAW
5b3h_F1e-3478142367Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093356.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093356.20.0protein indeterminate-domain 5, chloroplastic isoform X2
TrEMBLW9R1C40.0W9R1C4_9ROSA; Zinc finger protein MAGPIE
STRINGXP_010093356.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-100indeterminate(ID)-domain 5