PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092985.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 735aa    MW: 79915.5 Da    PI: 6.3533
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092985.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07310330526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C++Gd C +aHg
  XP_010092985.1 310 PCPEFRK-GACRRGDMCEYAHG 330
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.4E-1738181IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.24E-1547167IPR020683Ankyrin repeat-containing domain
CDDcd002042.16E-1386165No hitNo description
PfamPF127961.3E-987156IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.52987180IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00287117IPR002110Ankyrin repeat
PRINTSPR014153.2E-588103IPR002110Ankyrin repeat
PROSITE profilePS5008811.755122157IPR002110Ankyrin repeat
SMARTSM002481.8E-4122154IPR002110Ankyrin repeat
PRINTSPR014153.2E-5141155IPR002110Ankyrin repeat
SMARTSM003569.5E-6305331IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4310330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981310332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4338368IPR000571Zinc finger, CCCH-type
SMARTSM0035665340363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MCCGLERLKP IQSPAPSSIS FEENRVSNIA MNHLTVETED TFASLLELAA NNDVEGFKRS  60
IERDPSSIDE PGLWYGRQKG SKLMVNEQRT PLMVAATYGS IDVMKVILSL SAADVNRPYG  120
LDRSTALHCA ASGGAENAVD VVKLLLAAGA DPNSMDGNGH FPVDIIVVPP KLQDVKLALE  180
ELLKTTSSAV ARTLTVSTRN LNPSSPPLSS SPENGTESPS ASDFISSPTK SKFNDLPVSS  240
ASDKKEYPID PSLPDIKNSI YSTDEFRMYS FKVRPCSRAY SHDWTECPFV HPGENARRRD  300
PRKFHYSCVP CPEFRKGACR RGDMCEYAHG VFECWLHPAQ YRTRLCKDGT SCARRVCFFA  360
HTAEELRPLY VSTGSAVPSP RTGTPGAAAM DFAAAMSMLP GSPSSVSVMS PSPFTPPLSP  420
SNGMSHSSVA WPQPNVPALH LPSSNFQSSR LRSSLNARDI PAEDFDLLPD FDVQQQQLLN  480
EFSCLSQPSM SSNSFNRSGR LKTLTPSNLD DLFSAESSSP RYSDQALPSG VFSPTHKSAV  540
INQFQQQQSM LSPINTNFSP KNVDHPLLQA SFGVPSSGRM SPRNLEPISP MGSRVSMLAQ  600
REKQQQFRSL SSRELGSNSA SIVGSPVNSW SKWGSSNGKP DWAVSADELG KLRRSSSFEL  660
GNNGEEPDLS WVQSLVKESP TEMKEKLSAP VSGVAANVSS NEGSNVNSQV ESVDHAVLGA  720
WLEQMQLDHL VAQQN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010092985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092985.10.0zinc finger CCCH domain-containing protein 30 isoform X1
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLW9QSN90.0W9QSN9_9ROSA; Zinc finger CCCH domain-containing protein 30
STRINGXP_010092985.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]