PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010092549.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 293aa MW: 31971.2 Da PI: 8.6011 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0015 | 69 | 88 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F ++ L H+r XP_010092549.1 69 PCTECGKRFWSWKALFGHMR 88 6******************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.032 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.889 | 68 | 95 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.13E-7 | 69 | 90 | No hit | No description |
Pfam | PF13912 | 2.0E-7 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.7E-4 | 70 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.13E-7 | 216 | 243 | No hit | No description |
SMART | SM00355 | 4.6 | 221 | 243 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.3E-10 | 221 | 245 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.538 | 221 | 243 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 223 | 243 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 293 aa Download sequence Send to blast |
MSTAVPDSDL QLAVSPLHHH VVSTAANNPR KKRSKVIRFD NPKRTKSSPS PNGALSARKR 60 DNRPEITMPC TECGKRFWSW KALFGHMRCH PERQWRGINP PPNLLRGRSD LALIGSLATV 120 FSEEENDVAA SLLLLANGRP KSAETLEDQE VGDHIHDHDQ YGHGGFRFES SSCKKVFGSW 180 QALVGQRSSH KNVKGCFANG AVIVSEAEKK VFAVELGSGS HKCGICLRIF SSGQALGGHK 240 RCHWEKLGIS DDPPLLGLSQ ALNHSLDLNL PAPLEDDTFS SSSGMALDLT LAL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010092549.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010092549.1 | 0.0 | zinc finger protein ZAT3 | ||||
TrEMBL | W9QYZ6 | 0.0 | W9QYZ6_9ROSA; Zinc finger protein ZAT3 | ||||
STRING | XP_010092549.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6667 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35280.1 | 3e-72 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21393729 |