PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010091375.1 | ||||||||
Common Name | DREB5C | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 28381.3 Da PI: 5.8679 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.6 | 3.2e-18 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g XP_010091375.1 27 KYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 76 8*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.41E-18 | 27 | 84 | No hit | No description |
SuperFamily | SSF54171 | 5.82E-20 | 27 | 86 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.4E-34 | 27 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.838 | 27 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-11 | 27 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-30 | 27 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-9 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-9 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MVKIEKSPSK ARGNNSTPTS STPGKNKYKG VRMRSWGSWV SEIRAPNQKT RIWLGSYSTA 60 EAAARAYDAA LLCLKGSSAN LNFPTSTTTF SSSLQNDVPH DVVLSPKSIQ RFAAAAAAAV 120 TNTTTTTTTT TTTTANTTFV NDNNTLAIST LYNDLRSSSY SSSSSSSVVS SPSDQVDDDV 180 SLMGSLDGTR MNNDNNYDHH QQPMAMMESW PFDALIHEYS PKYVDHHDHQ MLTSLMFDPQ 240 MLVEDPYEES DIRLWSFC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 26 | 84 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010091375.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF678377 | 0.0 | KF678377.1 Morus notabilis dehydration responsive element binding transcription factor (DREB5C) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010091375.1 | 0.0 | ethylene-responsive transcription factor ERF014 | ||||
TrEMBL | W6FG87 | 0.0 | W6FG87_9ROSA; Dehydration responsive element binding transcription factor | ||||
STRING | XP_010091375.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4798 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21910.1 | 3e-29 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21403085 |