PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088235.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 755aa    MW: 82343 Da    PI: 7.2239
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088235.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.44.9e-08306326526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  XP_010088235.1 306 PCPDFRK-GACRRGDLCEYAHG 326
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.49E-1736164IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.1E-1737184IPR020683Ankyrin repeat-containing domain
PfamPF127968.7E-982151IPR020683Ankyrin repeat-containing domain
SMARTSM002480.002382112IPR002110Ankyrin repeat
PROSITE profilePS5029717.26382185IPR020683Ankyrin repeat-containing domain
PRINTSPR014156.0E-58398IPR002110Ankyrin repeat
CDDcd002041.98E-1484160No hitNo description
SMARTSM002480.0016117149IPR002110Ankyrin repeat
PROSITE profilePS5008811.621117152IPR002110Ankyrin repeat
PRINTSPR014156.0E-5136150IPR002110Ankyrin repeat
SMARTSM003561.2E-5301327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169306328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4306328IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5306326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4334364IPR000571Zinc finger, CCCH-type
SMARTSM0035640336359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MCGGPERSKS TSTPSTVETE SSAKDMSNGT LKADESFSSL LELASNNDVE GFKRSIDRDA  60
SSINEIALWY TRGKGAKHIV REYRTPLMVA ATYGSVDVLK LILSYSEVDV NLSCGLHKST  120
ALHCAASGGS VCAADVIKLL LSAGADPNLM DANGHCPVDV LVVHPKLQNM RVTLEELLSK  180
DASDGSVGEQ SLRLSINCSK YTDSSSRSSS PDNERSPSGS ISSPLASKMT DLPPITTLEK  240
KEYPIDPSIP DIKNSIYATD EFRMFSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDL CEYAHGVFEC WLHPAQYRTR LCKDGTSCNR RVCFFAHRTE  360
ELRPLYVSTG SAVPSPRASS ASGPSVMDVA AALSLLPGSP SSVSAMSPSP FAQPMSPSAN  420
GISPSSVAWP QPNVPTLHLP GSNLQSSRLR SSLSARDIPP EDLKMLLEFD AQQQLLNDLN  480
CISQPRLSSA SLSRSCRSKT LTPSNLEELF SAEISSSPRY SDHLAASTFS PTHKSAVLNQ  540
FQQQQSMLSP INTTVLSPKT VDHPLLPASF GVQSPGRMSP RSVEPISPMG TRLSVFSQRE  600
HQHQHQHHHH HQHQHQNQHQ SQHQHQHQHQ LRSLSSRDLG TNNTTSSIVG SPVSSWSKWG  660
SPNGKLDWSV NGDDDARMRR SSSFELGNNG EEPDLSWVQS LVRESPPEMM KDKAALSLNG  720
AAATASGGEG LNSNSQVETI DHSVLGAWVE QMQLA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010088235.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024187061.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_024187067.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLW9QQ240.0W9QQ24_9ROSA; Zinc finger CCCH domain-containing protein 30
STRINGXP_010088235.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]