PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010086708.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 737aa    MW: 83948.4 Da    PI: 5.4716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010086708.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06543562625
                     -SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                     C+f+++tG C++G rC++ H
  XP_010086708.1 543 CPFHLKTGACRFGQRCSRVH 562
                     ******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF038131.0E-223152IPR005554Nrap protein
PROSITE profilePS5010312.23537565IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-4542562IPR000571Zinc finger, CCCH-type
PRINTSPR018481.3E-34543562IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549281.49E-16556673IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018481.3E-34562582IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3302.7E-27568667IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010210.445569669IPR000504RNA recognition motif domain
CDDcd125403.95E-49570668No hitNo description
SMARTSM003613.6E-4591665IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018481.3E-34598613IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.3E-34626648IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.3E-34653677IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MKSTFNLAFR MTRVGCIQLQ DEATSTLRCI EKYRYGAFEE IFMTKVDFPS KYDHCIRLNF  60
KGNSEVYASG FCLDDECWRL YEQKVHNVLT EGSSDRVKLV HVIWRNTPSE CFIENGLSTF  120
SSEPLLIGIS MNSLRKAFRV VGIGPNPENK YEFGKVSNGK DDKPPLRFTY ARKRLHGKKL  180
AGAGEVDGTA ARESPIGYPI SYSASLLEAF EDLTKLLCAI EDIPLKVSTV QPLDSVVLFM  240
FFFSSHGHHP DLLVGNQAAA QEVEDQHAGG KLREVSELIS VLESFHLIDV LQDRRVWVPD  300
PNGSFSPMAE SIIKEGEKEG EIENHAEAEA SGSAMEKGMS RKEKRKALKK MKRKQARREI  360
AATERDEEEA RLNDPEEQMR IRLMEQEEVE RSERERKEFE LREKAWLEAM ELKKKKVIEQ  420
EEEEEEERKR KALDQESRRE QVENANEGNE SDDWDYVEDG PAEIIWQGNE IIFKKKKIRV  480
PKKKEPEELD KKVDANRPAS NPLPPESEAF PEYRNSLVSA QDLIDSVAQQ VPNFGTEQDK  540
AHCPFHLKTG ACRFGQRCSR VHFYPDKSCT LLIKNMYNGP GLAWEQDEGL EHTDEEIERC  600
YEEFYEDVHT EFLKFGEIVN FKVCRNGSSH LRGNVYVHFK SLDSAVLAHH YINGRFFAGK  660
QINCEFVNIT RWKVAICGEY MKSRFKEAHH YVTRSGAEGR AEGSGMGSAS GGTTQGVAEV  720
EGALEERKEG VAESASG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A3e-285346839155Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413430KKKVIEQEEEEEEERKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010086708.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024025810.10.0zinc finger CCCH domain-containing protein 5
TrEMBLW9QKY70.0W9QKY7_9ROSA; Zinc finger CCCH domain-containing protein 5
STRINGXP_010086708.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-114C3H family protein