PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801441.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 262aa    MW: 29893.2 Da    PI: 8.1399
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801441.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-1287139155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     rr +h  +Er+RR+++   ++ Lr+llP       ++K s ++   +Av+YIk++q
  XP_009801441.1  87 RRIMHRDIERQRRREMSALYSSLRSLLPLqY---VKGKRSVSDHMHEAVNYIKEMQ 139
                     799**************************66...9*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.62E-1085143No hitNo description
PROSITE profilePS5088813.84686138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1087152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-1387155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-987139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.001492144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.124193262IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MYSLQENDEL VFQILSNPCQ QSKISQDLVM DYASLETRTH HDPLNINNSQ VNKRLPKRIL  60
GTTDNNIPDH KKDETAAAAP ADDFKLRRIM HRDIERQRRR EMSALYSSLR SLLPLQYVKG  120
KRSVSDHMHE AVNYIKEMQA NIKELEKRRD LLIKSSLPDS IPHGTGNFRS NNFTLSPDCV  180
TVSPCLQGGI EILISVDCKS QSFPLSRVLR ELLKQGINVV SCVSAKVNQR SLYTIQIEVC  240
DMNNIDHQAL QQKVIDLINV DL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801441.10.0PREDICTED: transcription factor bHLH36-like
RefseqXP_009801442.10.0PREDICTED: transcription factor bHLH36-like
RefseqXP_016489167.10.0PREDICTED: transcription factor bHLH36-like
RefseqXP_016489168.10.0PREDICTED: transcription factor bHLH36-like
TrEMBLA0A1S4BJR80.0A0A1S4BJR8_TOBAC; transcription factor bHLH36-like
TrEMBLA0A1U7YBD90.0A0A1U7YBD9_NICSY; transcription factor bHLH36-like
STRINGXP_009801441.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.17e-44bHLH family protein