PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009795099.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 387aa MW: 39798 Da PI: 6.5863

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009795099.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8e-12	196	241	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y++ Lq XP_009795099.1 196 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVRFLQ 241 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.06E-16	189	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.65E-13	189	245	No hit	No description
PROSITE profile	PS50888	17.193	191	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-16	193	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-9	196	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	197	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MQAMNSQMSL QEENGASPGQ NMGHSHFDPT SSHDEFLQQI LSSVPSSSPW PDLSGGGDSH 60 FDDQSIFLAS KLRQNQITGG GGAAAAAKAL MLQQQLLLSR GLLDGNGDQN DDVGNPGNEI 120 SVQALYNGFA GSLGQTSNQP QHFHHAQGGS MQAQSFGAPA SSTMNQTPAA SGGSAGGGQP 180 KQQKVRARRG QATDPHSIAE RLRRERIAER MKSLQELVPN ANKTDKASML DEIIDYVRFL 240 QLQVKVLSMS RLGGAAAVAP LVADRSSEGG GGDSAQANGG GRGSNRTTSL ANNDSMTMTE 300 HQVAKLMEED MGSAMQYLQG KGLCLMPISL ATAISTATCH SMKPNNPLLH GGGSGGSAAI 360 NGGGGGPSSP SLSASTVQSA TMGNGGA

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MQAMNSQMSL QEENGASPGQ NMGHSHFDPT SSHDEFLQQI LSSVPSSSPW PDLSGGGDSH  60
FDDQSIFLAS KLRQNQITGG GGAAAAAKAL MLQQQLLLSR GLLDGNGDQN DDVGNPGNEI  120
SVQALYNGFA GSLGQTSNQP QHFHHAQGGS MQAQSFGAPA SSTMNQTPAA SGGSAGGGQP  180
KQQKVRARRG QATDPHSIAE RLRRERIAER MKSLQELVPN ANKTDKASML DEIIDYVRFL  240
QLQVKVLSMS RLGGAAAVAP LVADRSSEGG GGDSAQANGG GRGSNRTTSL ANNDSMTMTE  300
HQVAKLMEED MGSAMQYLQG KGLCLMPISL ATAISTATCH SMKPNNPLLH GGGSGGSAAI  360
NGGGGGPSSP SLSASTVQSA TMGNGGA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	205	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ444222	2e-97	DQ444222.1 Nicotiana plumbaginifolia Joka8 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795099.1	0.0	PREDICTED: transcription factor bHLH66-like
Swissprot	Q9ZUG9	2e-89	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1U7Y774	0.0	A0A1U7Y774_NICSY; transcription factor bHLH66-like
STRING	XP_009795099.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-62	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]