PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793123.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 450aa    MW: 48693.6 Da    PI: 4.9068
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.85.9e-14133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++++ +++G g+W++I+r+    Rt+ q+ s+ qk+
   XP_009793123.1 133 AWTAEEHRLFLQGLEKYGRGDWRSISRHCVVSRTPTQVASHAQKF 177
                      7*****************************9************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512935.4434296IPR017884SANT domain
SMARTSM007170.00434394IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-84699IPR009057Homeodomain-like
CDDcd001671.51E-44692No hitNo description
PROSITE profilePS5129418.979126182IPR017930Myb domain
SuperFamilySSF466891.79E-16128183IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-16130180IPR006447Myb domain, plants
SMARTSM007172.2E-11130180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-11131173IPR009057Homeodomain-like
CDDcd001675.49E-11133178No hitNo description
PfamPF002494.8E-11133176IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGSVLFNSLT TTIPNGKFSG LIPGGPSIAS VMQLATVLVK TCNSSSWTKE EDRAFETALA  60
IYAGDSDQLM KIAAAVPRKS IPEILQHYKK LVDDINDIEA GKVPLPRYGR MQGCSSRRSR  120
LSGAEVERRK GVAWTAEEHR LFLQGLEKYG RGDWRSISRH CVVSRTPTQV ASHAQKFFSR  180
LKDNNKAKRR RSIHDITTVD TVTTEPSQGQ ETEKLNGPCG GQLQWPITDY VTEAFDIGMF  240
PLPGPVTNCI TDAIGGPSSV NPETFPFGTA VVSELNSSLP NMDDEFLLGV EDLITVPTQG  300
TSEAWRGVDT RSSTSLSWQP SFVDGTGLYT HPVNSVGYEM EELITKELVE ATQVGPIVNT  360
ARLSLSIADH IGVHGCTTSS SGAKNGFEST VGALEAGLSV DSNPLLSIPG TSGSGEYPSF  420
NASIMDNNIF DLEDLFPDQM IGFYEKDGKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793123.10.0PREDICTED: uncharacterized protein LOC104240036
TrEMBLA0A1U7XQF70.0A0A1U7XQF7_NICSY; uncharacterized protein LOC104240036
STRINGXP_009793123.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139501113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-47MYB family protein