PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009792033.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | YABBY | ||||||||
Protein Properties | Length: 189aa MW: 20896.7 Da PI: 8.6935 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 233 | 7.3e-72 | 8 | 163 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 ssse+vCyv+CnfCntilavsvP + ++++vtvrCGhC++llsvn+ q l+ ++ l+++ + ++ + +++ ++s++++++ XP_009792033.1 8 SSSSERVCYVHCNFCNTILAVSVPCSGIMTIVTVRCGHCANLLSVNIGSLLQSLPLQD-LQKQQRSNIEDAS----KAFG-----SSSSTNYHRF 92 6899***************************************************999.5555444444433....3333.....3444555555 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + ++ +++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdi+hreafs+aaknWahfP+ihfgl XP_009792033.1 93 SAIGTSPEDDQPRTMP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDITHREAFSTAAKNWAHFPHIHFGL 163 5666677777788777.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.2E-74 | 10 | 163 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.15E-9 | 102 | 156 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.5E-5 | 112 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MSLDITYSSS SERVCYVHCN FCNTILAVSV PCSGIMTIVT VRCGHCANLL SVNIGSLLQS 60 LPLQDLQKQQ RSNIEDASKA FGSSSSTNYH RFSAIGTSPE DDQPRTMPIR PPEKRQRVPS 120 AYNRFIKEEI QRIKASNPDI THREAFSTAA KNWAHFPHIH FGLKLEGNKQ AKLDHAVAGE 180 GPQKSIGLC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792033.1 | 1e-141 | PREDICTED: axial regulator YABBY 5-like isoform X1 | ||||
Swissprot | Q9XFB0 | 2e-72 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1U7XMB7 | 1e-140 | A0A1U7XMB7_NICSY; axial regulator YABBY 5-like isoform X1 | ||||
STRING | XP_009792033.1 | 1e-140 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-70 | YABBY family protein |
Publications ? help Back to Top | |||
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