PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009791088.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 511aa    MW: 57677.3 Da    PI: 5.131
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009791088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.2e-10179200526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++tG Ck+G +CkF+H+
  XP_009791088.1 179 DCPYFMKTGVCKFGFNCKFNHP 200
                     7********************8 PP
2zf-CCCH31.33.6e-10224248327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C++++ +G CkyG  CkF+H++
  XP_009791088.1 224 QIECKYYLTSGGCKYGKACKFNHSR 248
                     568********************95 PP
3zf-CCCH40.93.5e-13269293226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG CkyG++C+F+H+
  XP_009791088.1 269 GEKECPYYMRTGSCKYGSNCRFHHP 293
                     7899********************9 PP
4zf-CCCH19.91.3e-06405431127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++f +tG Cky  +CkF+H++
  XP_009791088.1 405 PGQPDCSYFIKTGDCKYKFNCKFHHPK 431
                     5789*********************96 PP
5zf-CCCH36.21e-11453477327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +  C+f++r+G+Ck+G+ CkF H++
  XP_009791088.1 453 QTVCSFYSRYGICKFGPACKFDHPE 477
                     678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.5E-6173201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549174202IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-4174201IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-8179200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4180199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474221249IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4221248IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7225248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5226250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5227249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624267295IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7267294IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-11269293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7269294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5273292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962404432IPR000571Zinc finger, CCCH-type
SMARTSM003560.065404431IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-5409433IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131450478IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6450477IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5451478IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9453477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4455477IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MEEAIEQQQI QNQNQNQSPK HTQEELGFES QTPQTSLLPS DLNIQNPNQN QPNENDDEDE  60
MAMQIICEDL RDLVLNQALD KEREKEDLHH LDPEENGKIN ENEVENVEGN DDGWGDVGEY  120
GDYHYDEENR SGSVNGNDNE NDGEKENGYE GDSKEGGGFN ANNRIKKKFI YPLRPDAQDC  180
PYFMKTGVCK FGFNCKFNHP SRRKYQGTKE KGKQREESQE RPGQIECKYY LTSGGCKYGK  240
ACKFNHSREK GSISPIAEFN FLGLPIRPGE KECPYYMRTG SCKYGSNCRF HHPDPTTVAG  300
ADRSSGYNNG GAVPVQAASH PAASSWSSPR ALNDTAPYVP MMYPPTQGIP SPNTEWNGYQ  360
APVYPTAEKR LPTPPAFGMN NPATKTNYYP RPLQPLLVEE YPERPGQPDC SYFIKTGDCK  420
YKFNCKFHHP KSRVSKANSS TLNEKGLPLR PDQTVCSFYS RYGICKFGPA CKFDHPENYV  480
GSGSSTEYGF DQPQQSQMSL GWQGRELEVD R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-102HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791088.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X3
SwissprotQ9STM41e-120C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1U7XJM90.0A0A1U7XJM9_NICSY; zinc finger CCCH domain-containing protein 67 isoform X3
STRINGXP_009791086.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-115C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]