PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009787560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 637aa MW: 70437.7 Da PI: 7.0708 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 91.5 | 8.5e-29 | 64 | 147 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r+em+ +r+++lk+plWeevs+k+++ g++rs k+Ckek+en+ k+++++k+g+ ++ + +t+++fdql XP_009787560.1 64 RWPRQETLALLRIRSEMDVVFRDSSLKGPLWEEVSRKLADLGYHRSGKKCKEKFENVYKYHRRTKDGRASK--ADGKTYRFFDQLA 147 8********************************************************************96..66678******96 PP | |||||||
2 | trihelix | 104.1 | 1e-32 | 443 | 528 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi++r++++ +++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea XP_009787560.1 443 RWPKEEIEALIRLRTSLDLKYQDNGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 528 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.224 | 57 | 121 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0031 | 61 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.55E-24 | 63 | 128 | No hit | No description |
Pfam | PF13837 | 4.5E-18 | 63 | 148 | No hit | No description |
SMART | SM00717 | 2.6E-5 | 440 | 502 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-5 | 442 | 499 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.2E-22 | 442 | 529 | No hit | No description |
CDD | cd12203 | 2.97E-29 | 442 | 507 | No hit | No description |
PROSITE profile | PS50090 | 7.689 | 442 | 500 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
MLGGLMTTTS AGGGGAVSIS APPPPPPPQE APESGGSSEG GGGGDVAAAG GFSEEGERNS 60 GGNRWPRQET LALLRIRSEM DVVFRDSSLK GPLWEEVSRK LADLGYHRSG KKCKEKFENV 120 YKYHRRTKDG RASKADGKTY RFFDQLAAFE NTPSHTCLPP PPPPLAATPL TMAMPMPVRR 180 PNSSANPPIP MSQNTFTVSQ NNAAAPTVNH PLNASSLPPT QPIITTVNQI NRPQGNTSSL 240 LSNSTSSSST SSDEDIQKRH GKKRKWKDFF ERLTKDVIEK QEELQNNFLE TLEKRERERM 300 VREETWRVQE MTRMNREHDL LVQERSMAAA KDATIIAFLQ KITEQKNTPI PNITNASLAQ 360 IQFQLSEKSP SVPPHSQPQK QTQQPPAPPT TIPAPATTPA PATAVSLPMA IHAQVQTQAP 420 SLPFEAPKTD NGGENLSPAS SSRWPKEEIE ALIRLRTSLD LKYQDNGPKG PLWEEISAGM 480 RKLGYNRNAK RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYFHQLEALY KEKAKNEVVP 540 NTGTGFGLKP ENNNPMVPIM AEPEQQWPFP SNQPQQQQQQ QQGIMSNIIQ DHDNESDSME 600 EDDYDDDEDE GNAYEIVTNK QPSSMAAATA TAATTAV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 256 | 264 | QKRHGKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009787560.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1-like | ||||
Swissprot | Q39117 | 1e-137 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A1U7XM38 | 0.0 | A0A1U7XM38_NICSY; trihelix transcription factor GTL1-like | ||||
STRING | XP_009787560.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 4e-66 | Trihelix family protein |