PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009787362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 317aa MW: 36852 Da PI: 4.9618 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.4 | 2.4e-22 | 8 | 133 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 p +rF Ptd el+ ++Lkk ++g++l+ e i+ ++iy Pw++ + eek yf s+ +k++++ kr +r+ ++g+Wka+ +++++k XP_009787362.1 8 PSVRFYPTDAELI-YFLKKFLKGESLPNECPIRLAEIYGDrPPWEISDH--PEEKIGYFISPLKKRKESHKRFRRTCANGTWKAQTGGDPIKNSK 99 789**********.***********999667*******87478***733..344556***************************9999******* PP NAM 97 gelvglkktLvfy..kgrapkgektdWvmheyrl 128 g++vg +k+ v+ + + +k k +W+m ey + XP_009787362.1 100 GTVVGFRKSYVYRtrSSKGSKQDKINWLMREYYV 133 ************9443455666799*******75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-28 | 3 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.312 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-14 | 8 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MSMVSWLPSV RFYPTDAELI YFLKKFLKGE SLPNECPIRL AEIYGDRPPW EISDHPEEKI 60 GYFISPLKKR KESHKRFRRT CANGTWKAQT GGDPIKNSKG TVVGFRKSYV YRTRSSKGSK 120 QDKINWLMRE YYVGDDYFWE NNIPKQDIVL CRIKKNITER NRNGVNMEEQ EVAQVIEAML 180 REPDYNSSQS ATISQRHQIM KAEYAEQQDN YLRGLNKNSQ ILTTYDRGEA TLENYGANTN 240 RVYVMTEEAN TAESGQEEAY GQLSFPGIHE QYCAEADLNT DNSDFSDLNA DNSDFLELTL 300 TNGIEDIVPD DWWHQFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-11 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-11 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-11 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-11 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-11 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-11 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-11 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-11 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-11 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-11 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-11 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-11 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-11 | 1 | 156 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-11 | 1 | 156 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009787362.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Refseq | XP_016447919.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | A0A1S3Y7L1 | 0.0 | A0A1S3Y7L1_TOBAC; NAC transcription factor 29-like | ||||
TrEMBL | A0A1U7X5I4 | 0.0 | A0A1U7X5I4_NICSY; NAC transcription factor 29-like | ||||
STRING | XP_009787362.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 7e-17 | NAC domain containing protein 2 |