PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009785120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 716aa MW: 79960.1 Da PI: 8.5783 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 76 | 97 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F + n++rH+r+H XP_009785120.1 76 KCEKCSREFYAPINYRRHMRLH 97 7*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.432 | 75 | 97 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence Send to blast |
MSVGKLRIGA TPAAMKADEG NDSLDTLIRQ AIGKEPLFSF SRTGDGPVQW FQLLHGLEQQ 60 DNAGGWPMLT PLKLQKCEKC SREFYAPINY RRHMRLHRRA LNFDKESRKY RDLLGAFWDK 120 LSVDEIKEVV SLHDVSIKVS TRFTLPVHDV SIKDLAGSSL VNDLATSLQK MAIWAHPQDY 180 YEAGLALLEV IQGKPSKLPI TSQELFSILD DASETTFLCA GTAESVQKYV FDGYAAKKGL 240 EFKNLVACAS FLFEQKLVKA WFADKDAEAM RCQKLLFEEE EAAQKRRAEL LERKKLKKLR 300 QKEQRAREQS NWERGDLEVP ADSFEGPIAE SSVRSAAASE SSSSTPQVSD DISSCLELVQ 360 FSNNENMDIE AQLNISHPHL DLVEIQDVEP PPVSANSRRH FPHTQWQVAK SQRTGRNGFR 420 NNQNHEVQNL EPIQKHGVIK DRGAPVNGSK IWTRKIRVQN GERLRLDPQK EAIDQNQRNC 480 EVMIGSISVS MKNCSTHGQG NCPAVERDNF ESIEPAMLQK LNHVQKPAKH DVLQGGSNGA 540 AVKLWRPVSR HGSGRQDPGE DVISVKLDNR TSSTENNLRL CSRDNPTGKT KNYTCQVSDG 600 NVLQGLGFCS VSAKAFLSQR WKEAISGDHV RLVLSDDIEV SGQSDTQNGS SEAAPRSADQ 660 DHGILVKADN QQANTGDLSF SSNGNSKVKF RQKPDKSTKI KCIPKQKKQK QKQALI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 291 | 298 | ERKKLKKL |
2 | 703 | 710 | PKQKKQKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785120.1 | 0.0 | PREDICTED: uncharacterized protein LOC104233422 isoform X1 | ||||
Refseq | XP_009785121.1 | 0.0 | PREDICTED: uncharacterized protein LOC104233422 isoform X1 | ||||
TrEMBL | A0A1U7XF89 | 0.0 | A0A1U7XF89_NICSY; uncharacterized protein LOC104233422 isoform X1 | ||||
STRING | XP_009785120.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3722 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 1e-86 | C2H2-like zinc finger protein |