PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009784033.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 541aa MW: 57078.4 Da PI: 8.663

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009784033.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.3e-08	205	249	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ av++ G g+W+ I + Rt+ q+ rw XP_009784033.1 205 RKPWSETEDMELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 249 789************************984222488888888888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.537	200	257	IPR017930	Myb domain
SuperFamily	SSF46689	2.08E-12	201	255	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-13	201	252	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-8	204	255	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-7	205	249	IPR001005	SANT/Myb domain
CDD	cd11660	4.72E-14	206	254	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MFEKSKKQKC FVTEEDISTL LQRYNATTVL GVLGEVAAQV AADDKIDWNA LVKKSTTGIT 60 NAREYQMLWR HLAYRHGLLD KLDDAAQPLD DDSDLEYELE AFPTVSNEAS AEAAACVKVL 120 IASGVPNDTN MLNGSTVEAP LTINIPNVQT SRTGVDNSLH GTSIHGTNIT VPVAVQKQPF 180 STVAAAEGLD THGPACTNLP PRRKRKPWSE TEDMELIAAV QKCGEGNWAN ILKGDFKGDR 240 TASQLSQRWA IIRKRQGTMV GNGSQLSEAQ LATRRAMSLA LNMPMGDNLK AACPISVSVG 300 QNSGARPSNC SHSVADFASG GAQSQHQQDP LSSKPRIVPK KPLPKPNTSP DSMVKVAAVA 360 AGARVATPSN GASLLKTVES KSAVQLPGGG PAVKSHVPVS TNGLPSNVHF IRTGLVSHST 420 VPSNASRPGT QQVLGHSLKR VSPAFQLSPA GTSSRPNASA APNAPICAPV AELDDTKQKL 480 LQKSQTTALS SAQSEKQVGV VGASGDKALP PQGQQEKLPA SSNPLIEKVE DQTLSFSDEV 540 K

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MFEKSKKQKC FVTEEDISTL LQRYNATTVL GVLGEVAAQV AADDKIDWNA LVKKSTTGIT  60
NAREYQMLWR HLAYRHGLLD KLDDAAQPLD DDSDLEYELE AFPTVSNEAS AEAAACVKVL  120
IASGVPNDTN MLNGSTVEAP LTINIPNVQT SRTGVDNSLH GTSIHGTNIT VPVAVQKQPF  180
STVAAAEGLD THGPACTNLP PRRKRKPWSE TEDMELIAAV QKCGEGNWAN ILKGDFKGDR  240
TASQLSQRWA IIRKRQGTMV GNGSQLSEAQ LATRRAMSLA LNMPMGDNLK AACPISVSVG  300
QNSGARPSNC SHSVADFASG GAQSQHQQDP LSSKPRIVPK KPLPKPNTSP DSMVKVAAVA  360
AGARVATPSN GASLLKTVES KSAVQLPGGG PAVKSHVPVS TNGLPSNVHF IRTGLVSHST  420
VPSNASRPGT QQVLGHSLKR VSPAFQLSPA GTSSRPNASA APNAPICAPV AELDDTKQKL  480
LQKSQTTALS SAQSEKQVGV VGASGDKALP PQGQQEKLPA SSNPLIEKVE DQTLSFSDEV  540
K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	206	PRRKRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009784033.1	0.0	PREDICTED: uncharacterized protein LOC104232506
TrEMBL	A0A1U7WZM0	0.0	A0A1U7WZM0_NICSY; uncharacterized protein LOC104232506
STRING	XP_009784033.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3434	22	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	3e-75	MYB_related family protein