PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781581.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 156aa    MW: 18077.4 Da    PI: 7.5137
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781581.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.53e-17248147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    k+ie++  r+ tfskRr g+ KKA+EL  LC+++v +++fs+tgk +
  XP_009781581.1  2 KKIESEDDRYATFSKRRSGLYKKASELVKLCNVDVGIVLFSPTGKPF 48
                    68******************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.88E-21165IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-15153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.212154IPR002100Transcription factor, MADS-box
PfamPF003191.9E-22350IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-91631IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-93152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MKKIESEDDR YATFSKRRSG LYKKASELVK LCNVDVGIVL FSPTGKPFSF FHPTSEAIID  60
RFLNPNMQLS ESTSLVATHA RNKVNQLNNR KKVFDNIKEV ASAQSLMLDN MKENGQRYWW  120
ESIEQFNADE VTKFEAWLST TVFNMNNRLE QLENEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781581.11e-113PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_016474013.11e-113PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1S4ABV11e-112A0A1S4ABV1_TOBAC; agamous-like MADS-box protein AGL61
TrEMBLA0A1U7WW961e-112A0A1U7WW96_NICSY; agamous-like MADS-box protein AGL61
STRINGXP_009781581.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-26AGAMOUS-like 61