PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009780420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 284aa MW: 32135.9 Da PI: 6.4989 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 108 | 4.9e-34 | 37 | 93 | 3 | 59 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + lkcprC s ntkfCyynny+ sqPr++Ck+C+r+Wt+GG+lrnvPvGggr++++ XP_009780420.1 37 PEPLKCPRCGSINTKFCYYNNYNKSQPRHYCKGCKRHWTEGGTLRNVPVGGGRKNKR 93 6789***********************************************977665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-23 | 33 | 93 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-30 | 39 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.757 | 40 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 42 | 78 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MGLSTKLVSF DDHGLDNWSQ NSLPEPPSTR RQPTPKPEPL KCPRCGSINT KFCYYNNYNK 60 SQPRHYCKGC KRHWTEGGTL RNVPVGGGRK NKRLRPTDPV DHITRMECVT LEVKDQRCPL 120 ISTTVPSSTI RGNVTTNDEE KKESDIFYQT LNFPSTSLQF DHTISSFSKK PFSGNYNDIF 180 AGLKLDGNTH FSFSYDTVPC SLSTQTSNIC NEYMGKFDST VEESSITTVM PITGSSDLLS 240 QPWKIPETSN NITENMSSYW NWNEIDTLCT ADLNIAWDDL EIKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780420.1 | 0.0 | PREDICTED: dof zinc finger protein PBF-like | ||||
TrEMBL | A0A1U7X1S1 | 0.0 | A0A1U7X1S1_NICSY; dof zinc finger protein PBF-like | ||||
STRING | XP_009780420.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6171 | 20 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38000.1 | 4e-28 | DNA binding with one finger 4.7 |