PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009778967.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 286aa MW: 32805.4 Da PI: 9.8745 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.9 | 2.5e-15 | 64 | 153 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k +++s+v++ +l+lp+ f++ h ++ ++t+tl des ++++ k+ ++++ l++GW++F a++L egD++ F+l + + l+v XP_009778967.1 64 FMKPMIRSNVTAGFWLSLPRFFCQLHL--PRHDTTVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLAHNLVEGDVLGFQLFRFCK--LKVY 150 89*********************8884..35678****************555555....9**********************865344..4777 PP EE- CS B3 96 vfr 98 ++r XP_009778967.1 151 IVR 153 766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-18 | 56 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-21 | 57 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.32E-23 | 62 | 153 | No hit | No description |
SMART | SM01019 | 6.6E-18 | 64 | 155 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.575 | 64 | 155 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-13 | 64 | 154 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MKDMSLRLQG THKQVFCKKP KKRRSCKNKM AMMQNLYGRF DLASSAKYRA EEVQSRLSTK 60 YPSFMKPMIR SNVTAGFWLS LPRFFCQLHL PRHDTTVTLV DESQEEYKTK YLAERNGLSG 120 GWRGFSLAHN LVEGDVLGFQ LFRFCKLKVY IVRANYLAEV DAALVLLHLD AHQKQANPVH 180 QMQDNRSTKQ GGIKRQRFSS QREEDDYSAE ENMLHKHSHP RNMFKDLDLP SKAAGLTYEN 240 LSIVDAVKAS KINDPSNGFS SWNTRPTELE QLEISSFSGG YSIEPA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009778967.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X1 | ||||
Refseq | XP_009778968.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X1 | ||||
TrEMBL | A0A1U7WK84 | 0.0 | A0A1U7WK84_NICSY; B3 domain-containing protein At5g42700-like isoform X1 | ||||
STRING | XP_009778967.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13184 | 12 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-42 | B3 family protein |