PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009774954.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 490aa MW: 54868.9 Da PI: 7.8162 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.4 | 1.3e-18 | 31 | 121 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv+ d s+ l++p +fa+ ++ ++++ led+sg++W+v + r ++g+ +++GW F +++gLk gDf+vF++++ + f v+ XP_009774954.1 31 FFKVM--IDKRFSKVLYFPPRFARLVSHL--TNQETYLEDSSGQKWKVGI--RIHKGSLAIREGWHAFSSEHGLKIGDFLVFHYIQGQHF--IVQ 117 88999..78888889********888655..4558***************..999999***************************97777..999 PP EE-S CS B3 96 vfrk 99 +f + XP_009774954.1 118 IFGT 121 9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.85E-23 | 29 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.719 | 29 | 122 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-22 | 29 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.74E-20 | 30 | 119 | No hit | No description |
Pfam | PF02362 | 1.6E-16 | 31 | 120 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-15 | 31 | 122 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.374 | 387 | 485 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.39 | 389 | 483 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.6E-10 | 397 | 481 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.83E-10 | 400 | 481 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.01E-7 | 422 | 481 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MVHQNEACEK CTQTCLLIHG QRDPSPIVNS FFKVMIDKRF SKVLYFPPRF ARLVSHLTNQ 60 ETYLEDSSGQ KWKVGIRIHK GSLAIREGWH AFSSEHGLKI GDFLVFHYIQ GQHFIVQIFG 120 TSGCQKISFD NGTRTGKKRR RTNCKATSQD ELLPEIDINS RKKWNSTHSD TAVPESEMAD 180 HEAVTTTFAS TIDADTGILE IVHEAEAISN ILQGEDGPRN HVSTNSISQR ESSLVDEVPV 240 EMELLSFQAP VHFLDIGITQ TEKISEPVND ILLLGQKDEN VHNMGLISST SSAEKSGKGS 300 HLVLPSNKES RCSNQATREK SNKASHIDKR ELKEMAAKTD CSAEKLNGKE PKLIEKDGQG 360 FLRAVSGNNK VIKSEPADSG DTSFPDAGNF SCLLRVDGRN FLELPQSWPQ VLTGRKKLEH 420 STIYLQGPDD RPWPVTYHER AGTKVLASRW ALFTAAYGIK PGDECRFQVL NLSERRFKVH 480 IGHKLRCYSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009774954.1 | 0.0 | PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X1 | ||||
TrEMBL | A0A1U7WJV6 | 0.0 | A0A1U7WJV6_NICSY; B3 domain-containing protein Os02g0598200-like isoform X1 | ||||
STRING | XP_009774954.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2210 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 1e-12 | B3 family protein |