PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009772253.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 27477.8 Da PI: 6.5138 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65 | 2.3e-20 | 15 | 145 | 3 | 128 |
NAM 3 pGfrFhP.tdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk...kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 G +F+P +d++l+ yL+k v g ++e + i+++d+y +P +L + +++++ y F++ +kk+ gk+ nr +t g Wk + k+ XP_009772253.1 15 IGTKFQPyNDQDLI-SYLQKFVCGMPIES-DRIRHIDVYGNkKPCELFQdllGETSTDHVNYIFTQLKKKSDGGKNYNRsITGGGSWKGRDTGKP 107 79*****6688888.9***********99.88******97549****74333222234456******************8999************ PP NAM 92 vlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 v +k+g+++glkkt+ f ++ + + ++ W m+ey l XP_009772253.1 108 VRDKEGSVIGLKKTFRFDEEsDIGNNQRIVWSMKEYCL 145 *****************96536678899********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-20 | 10 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.233 | 13 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-9 | 16 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MATKSERRKF SSCTIGTKFQ PYNDQDLISY LQKFVCGMPI ESDRIRHIDV YGNKKPCELF 60 QDLLGETSTD HVNYIFTQLK KKSDGGKNYN RSITGGGSWK GRDTGKPVRD KEGSVIGLKK 120 TFRFDEESDI GNNQRIVWSM KEYCLSDARL EVLRQRSQIR HEDSVLCSIE KKVNLCKNSQ 180 DISSSSSATI YCGWSLYTEL TKLPPFDGPF ESLTEEELAF FDNPDPGYSH AYENIQEENK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772253.1 | 1e-180 | PREDICTED: NAC domain-containing protein 2-like | ||||
Refseq | XP_016500359.1 | 1e-180 | PREDICTED: NAC domain-containing protein 2-like | ||||
TrEMBL | A0A1S4CH84 | 1e-179 | A0A1S4CH84_TOBAC; NAC domain-containing protein 2-like | ||||
TrEMBL | A0A1U7W0W1 | 1e-179 | A0A1U7W0W1_NICSY; NAC domain-containing protein 2-like | ||||
STRING | XP_009772253.1 | 1e-180 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3381 | 10 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 2e-13 | NAC domain containing protein 2 |