PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009771974.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | RAV | ||||||||
Protein Properties | Length: 329aa MW: 38429.2 Da PI: 7.5277 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.5 | 4.5e-10 | 47 | 95 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV +g W A+I+ ++r++lg+f ++ eAa a++ a+ +l+ XP_009771974.1 47 SRFKGVV-GQHNGHWGAQIYTN-----QQRIWLGTFKSETEAAMAYDSAAIRLRS 95 6899996.4448******8883.....5**********99************985 PP | |||||||
2 | B3 | 98.5 | 4e-31 | 170 | 257 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+ltpsdv+k++rlv+pkk+a+++ ++++ +++l+++d+s r+W+++++y+k+s+++v+tkGW++Fvk++gL+++D++vF l + XP_009771974.1 170 FQKELTPSDVGKLNRLVIPKKYASKYfpQIQEVPDVELVFYDTSRRQWKFRYCYWKSSQSFVFTKGWNRFVKDKGLRANDTIVFNLCE 257 99**************************88888999************************************************9764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-13 | 47 | 104 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.77E-21 | 47 | 105 | No hit | No description |
Pfam | PF00847 | 1.0E-5 | 47 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.239 | 48 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-18 | 48 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-16 | 48 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-34 | 166 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.15E-30 | 168 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.82E-29 | 169 | 255 | No hit | No description |
Pfam | PF02362 | 3.7E-27 | 170 | 257 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-25 | 170 | 264 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.395 | 170 | 277 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MEEETNIMMS STTTYLTGDC DSSSTNNMQS KKHKRNAYTR KACISGSRFK GVVGQHNGHW 60 GAQIYTNQQR IWLGTFKSET EAAMAYDSAA IRLRSQDSHR NLPWTNSTVQ EPNFQRQFST 120 EDILRMIKEG SYPTKFDEYL KEKYEECHPF NTLPVAELKA NEGFSYKQLF QKELTPSDVG 180 KLNRLVIPKK YASKYFPQIQ EVPDVELVFY DTSRRQWKFR YCYWKSSQSF VFTKGWNRFV 240 KDKGLRANDT IVFNLCEYKT GPKEISADFV IDVLKGVEVL PEPKVEIEER MKTQSTDDHA 300 VEPVWLFGVQ IGWSTNNDDD DYMNRHFFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 8e-28 | 169 | 254 | 13 | 101 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009771974.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
Refseq | XP_016492322.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Swissprot | Q9C688 | 1e-89 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A1S4BTX1 | 0.0 | A0A1S4BTX1_TOBAC; AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
TrEMBL | A0A1U7WBE0 | 0.0 | A0A1U7WBE0_NICSY; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
STRING | XP_009771974.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5252 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 5e-92 | RAV family protein |