PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770879.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 432aa    MW: 48072.4 Da    PI: 8.2857
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06103124426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C+++ +   C+yG++Ck+ H+
  XP_009770879.1 103 VVCKYWVK-EKCNYGNSCKYLHS 124
                     67******.9************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0241540IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.4691541IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6199126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-599124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-699123IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4100125IPR000571Zinc finger, CCCH-type
SuperFamilySSF509789.16E-47122171IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.3E-9124199IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.4E-6130169IPR001680WD40 repeat
PfamPF004001.9E-5133169IPR001680WD40 repeat
PROSITE profilePS5029422.517137388IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.516137169IPR001680WD40 repeat
PROSITE patternPS006780156170IPR019775WD40 repeat, conserved site
PRINTSPR003201.5E-6156170IPR020472G-protein beta WD-40 repeat
SuperFamilySSF509789.16E-47209425IPR017986WD40-repeat-containing domain
SMARTSM0032013209248IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.5E-36213423IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.4E-4254292IPR001680WD40 repeat
PfamPF004006.6E-4260292IPR001680WD40 repeat
PROSITE profilePS5008210.676261301IPR001680WD40 repeat
PRINTSPR003201.5E-6279293IPR020472G-protein beta WD-40 repeat
SMARTSM003203.0E-5295332IPR001680WD40 repeat
PfamPF004000.0024297331IPR001680WD40 repeat
PROSITE profilePS500828.871302341IPR001680WD40 repeat
PRINTSPR003201.5E-6319333IPR020472G-protein beta WD-40 repeat
SMARTSM003201.4336379IPR001680WD40 repeat
SMARTSM003201.3382419IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MGRLHPSQDH KQRTTKKLVV CKHWLAGNCN RFPCQFLHSR ELVEPSWPKQ QQQQYAKRFS  60
DDHNPKKKKN YNNNTWRRSS TTTTTAAGGG GVVVTNNNKT EKVVCKYWVK EKCNYGNSCK  120
YLHSWTTGNC FTLLAQLQGH EKVVTGIALP SGSDKLYSGS TDKTVRLWDC QYGTDAGVFN  180
LDGEIGCMLT EGPWIFVGLP NFVKARHTQT GTVLSLNGPI GQVYALVFDD NNHMLFAGTE  240
EGPILAWRFV NGSNFERAAT LIGHTHHVVS LFAGAGNILY SGSMDKSIRV WSLETFQCLQ  300
VLTDHTSTVM SVLCWEDFLL SCSLDKTIKV WAANESGNLE VTYTHQEDSG VLTLCGVHDS  360
EAKPVLLCSC SDNTVRVYDL PSFSERGRIF SKQAVRRIEI GPGGLLFTGG ESGQVRVWKW  420
LTDHQSSSTT TA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A6e-191344308320Tako8
6g6n_A6e-191344308320Tako8
6g6n_B6e-191344308320Tako8
6g6n_C6e-191344308320Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770879.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
RefseqXP_016500438.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ21e-164C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A1S4CH260.0A0A1S4CH26_TOBAC; zinc finger CCCH domain-containing protein 48-like
TrEMBLA0A1U7W8930.0A0A1U7W893_NICSY; zinc finger CCCH domain-containing protein 48-like
STRINGXP_009770879.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-160zinc finger WD40 repeat protein 1