PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770534.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 263aa    MW: 29305.3 Da    PI: 9.4065
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770534.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-087091425
                    ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                    ++C  f+r G C+yG+ C++aH
  XP_009770534.1 70 PPCLQFQRWGSCRYGGECRYAH 91
                    89******************** PP
2zf-CCCH21.93.1e-07109132225
                     -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                     k + C+ff  +  C+yG++C+F H
  XP_009770534.1 109 KPKSCHFFDSGKDCPYGNKCHFLH 132
                     566799999999************ PP
3zf-CCCH34.73.1e-11172197227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C ++ rtG C yG++C+FaHg+
  XP_009770534.1 172 KTKFCVNWERTGSCAYGSKCQFAHGK 197
                     566699******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5266694IPR000571Zinc finger, CCCH-type
SMARTSM003560.00836793IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-57094IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-67091IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-47191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-7106135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.469107135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6107135IPR000571Zinc finger, CCCH-type
SMARTSM003560.0024107134IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-5109132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-15167201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342170198IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6170197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-9170201IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-8175197IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSMPANNFGI SCKHEEHSSK QWPQYNTSGK KCGFNSNAEC QAFKRPRMMN SKMGPEDNRT  60
NMGMTLGPQP PCLQFQRWGS CRYGGECRYA HITGPLNGIR VGDQRNLSKP KSCHFFDSGK  120
DCPYGNKCHF LHERSQKLEG GVGFCRVSSA ISIATSGNEP KRSVELRKNL LKTKFCVNWE  180
RTGSCAYGSK CQFAHGKAEL QTLGSSNTLE SLGSAGICAP AKNAASECRF LFKWTNVQKI  240
SRIYADWIER VQLVPLSSHT VEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770534.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
RefseqXP_016470997.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A1S4A2U00.0A0A1S4A2U0_TOBAC; zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A1U7W7A90.0A0A1U7W7A9_NICSY; zinc finger CCCH domain-containing protein 39-like
STRINGXP_009770534.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-23C3H family protein