PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009769292.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 203aa MW: 23124.6 Da PI: 5.4501

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009769292.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.5	1.5e-10	45	88	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Er+RR+++N+++ Lr+l+P+ + ++K +i + A+ YI++Lq XP_009769292.1 45 IPERNRRRKLNERLLALRSLVPNI-----TNMTKEAIITDAITYIRELQ 88 67*******************6.....58***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.672	38	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-14	38	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.82E-9	40	92	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-12	42	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-8	43	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.1E-10	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MLIKFEKMES LNTPFDDSQI SEDSKVDRRK QFDGEVKEHK SKNLIPERNR RRKLNERLLA 60 LRSLVPNITN MTKEAIITDA ITYIRELQTN VSNLTEQLLE MESPHIEELE TKNEEIIDAA 120 EPEVEVAHIG TSKLWIKIVC QKKRGGFTKL MEAMNVVGFD LNDTSVTASK GTLLVTSSVE 180 VVRGGLIEAH QIREILLEII RGI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769292.1	1e-146	PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like
TrEMBL	A0A1U7VMY4	1e-144	A0A1U7VMY4_NICSY; transcription factor DYSFUNCTIONAL TAPETUM 1-like
STRING	XP_009769292.1	1e-145	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9107	16	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21330.1	2e-30	bHLH family protein